Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d05
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    31   1.3  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    29   5.3  

>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
 Frame = -2

Query: 396 IDGTKIGIQKPSQPDAQKASFSSYKNKNTLKFLVGASPGGLLSYVSNGYAGSASDRQIVE 217
           +DG  I I+ P    +    F +YK+  +   LV     G + +V  G  GS +D  I  
Sbjct: 32  LDGKHIRIKAPPHSGSL---FFNYKHFFSFVLLVVVDADGRVIWVDVGSPGSNNDASIFS 88

Query: 216 RSKLLQICDSGDSI----MADRGFNIQDLFASKGISINVPSF--LKGKSQIPGAQLEIDQ 55
            SKL  I D   ++       R F ++    + GI    P    L G + +  +Q  +++
Sbjct: 89  DSKLKTILDEEANLPPPTFWSRDFVVKPFVIADGIFKITPRMMTLYGGNGLNISQKVLNK 148

Query: 54  KLASQRVHIE 25
           KL+  RV  E
Sbjct: 149 KLSRARVKAE 158


>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -1

Query: 820 IILLLELKPSNILRLFSTELLLADDETVQYYIGLETASKFSFVLITLLPMSNDIRYRWSR 641
           I+L++ +    + ++F T  LL+D +   + + +  A    FV+I + P++  I Y W+ 
Sbjct: 682 ILLIVAVFLLIMAQVFGTVWLLSDRDPNNFNLFIAIAFLCGFVMIAIYPLALIIMYSWTN 741

Query: 640 V 638
           V
Sbjct: 742 V 742


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -1

Query: 820 IILLLELKPSNILRLFSTELLLADDETVQYYIGLETASKFSFVLITLLPMSNDIRYRWSR 641
           I+L++ +    + ++F T  LL+D +   + + +  A    FV+I + P++  I Y W+ 
Sbjct: 653 ILLIVAVFLLIMAQVFGTVWLLSDRDPNNFNLFIAIAFLCGFVMIAIYPLALIIMYSWTN 712

Query: 640 V 638
           V
Sbjct: 713 V 713


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -1

Query: 820 IILLLELKPSNILRLFSTELLLADDETVQYYIGLETASKFSFVLITLLPMSNDIRYRWSR 641
           I+L++ +    + ++F T  LL+D +   + + +  A    FV+I + P++  I Y W+ 
Sbjct: 653 ILLIVAVFLLIMAQVFGTVWLLSDRDPNNFNLFIAIAFLCGFVMIAIYPLALIIMYSWTN 712

Query: 640 V 638
           V
Sbjct: 713 V 713


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = -2

Query: 447 YYMPNCFRTHYPSTRVIIDGTKIGIQKPSQPDAQKASFSSYKNKNTLKFLVGASPGGLLS 268
           +++PN  +   P  R  IDG K  +  P    A K  F  Y + + +   +       +S
Sbjct: 267 WFLPNRTKNAKPVLRYFIDGKKPFVMVPEYEIATKEKF-QYTDSSFMATGIDTIDLSDIS 325

Query: 267 YVSNGYAGSASD----RQIVERSK 208
            V++   GS SD    R  +ER+K
Sbjct: 326 LVASSNGGSLSDFYCIRFNIERTK 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,602,595
Number of Sequences: 27780
Number of extensions: 317314
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)