Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d05
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    28   0.12 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.64 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = -2

Query: 465 SRSLVNYYMPNCFRTHYPSTRVIIDGTKIGIQKPSQPDAQKASFSSYKNKNTLKFLVGAS 286
           S+ L+     N   T +P+T VI   T  G ++  Q   Q+      +  ++   +VG S
Sbjct: 765 SQGLLQCATSNYSTTRWPATSVIT--TTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNS 822

Query: 285 PGGLLSYVSNGYAGSAS 235
           P     Y+S     S S
Sbjct: 823 PASSPRYLSAAATSSTS 839


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 403 PCGGIMCSKTIRHXXXXXXXXRPNVN*ALDITDKIYSCYNNIRHFSFTY 549
           PC  I+ S T           RP+     +I  ++YS  N++R+    Y
Sbjct: 7   PCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIY 55


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 118 KCPIFFKR*ITNPRCSVRDR 59
           KC I+ K    NP  SV+DR
Sbjct: 61  KCEIYAKCEFLNPGGSVKDR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,272
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)