Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16d04
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 210 7e-55
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 119 3e-27
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 106 2e-23
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 105 3e-23
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 104 7e-23
10_08_0620 - 19321612-19323237 103 1e-22
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 98 6e-21
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 95 4e-20
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 95 4e-20
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 95 5e-20
11_06_0178 + 20942757-20942801,20943790-20943867,20943930-209440... 92 4e-19
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 81 7e-16
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 47 1e-05
04_04_1141 + 31180906-31181249,31181719-31181862,31181971-311820... 29 3.0
01_05_0793 + 25278846-25279504,25279598-25279702,25280949-252810... 29 3.0
09_04_0669 + 19335661-19335917,19336153-19336279,19336393-193367... 28 7.0
04_03_0913 + 20777859-20780309 28 9.3
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 210 bits (514), Expect = 7e-55
Identities = 100/202 (49%), Positives = 138/202 (68%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 574
ELGY D+V V+E+G RV V K E + ++T+V+RGSTD+ +DD+ERA+DDGVNT+K +
Sbjct: 341 ELGYADSVSVEEIGGARVTVVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKSM 400
Query: 573 ARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATE 394
RD R +PGA ATEIELA++L EF+ GL+QYA+ KFA + E +PR LA+N+G +A E
Sbjct: 401 CRDSRIIPGAAATEIELARRLKEFSLKETGLDQYAIAKFAESFEMVPRTLAENAGLSAME 460
Query: 393 VVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVD 214
+++ +Y H G G ID E G D I D Y+ K + +KY+ AA T+L+VD
Sbjct: 461 IISSLYAEHAGGNTKVG--IDLEEGGCKDVSIMKIWDLYVTKLFALKYSADAACTVLRVD 518
Query: 213 QIIMAKRAGGPKPRAPAGSDDE 148
QIIMAK AGGP+ A G D++
Sbjct: 519 QIIMAKPAGGPRRDAQPGMDED 540
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 119 bits (286), Expect = 3e-27
Identities = 64/198 (32%), Positives = 109/198 (55%)
Frame = -3
Query: 750 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 571
LG C+ +VG+ R +F S + +TIV+RG D ++++ ER++ D + +
Sbjct: 345 LGTCEVFEERQVGNERFNIFSGCPS-GQTATIVLRGGADQFIEEAERSLHDAIMIVRRAL 403
Query: 570 RDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEV 391
++ VPG GA ++E+++ L + A T+ G Q+ V FA ALE IPR L DN+G +AT+V
Sbjct: 404 KNSTVVPGGGAIDMEISKYLRQHARTIAGKSQFFVNSFAKALEVIPRQLCDNAGFDATDV 463
Query: 390 VNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQ 211
+NK+ + H G+ A F +D G+ D+ + + ++K I A AA IL VD+
Sbjct: 464 LNKLRQKHASGE-GANFGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 522
Query: 210 IIMAKRAGGPKPRAPAGS 157
+ ++ + A A +
Sbjct: 523 TVKNPKSESAQGDAAASA 540
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 106 bits (255), Expect = 2e-23
Identities = 56/191 (29%), Positives = 107/191 (56%), Gaps = 4/191 (2%)
Frame = -3
Query: 726 VDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPG 547
V ++GD F ++ + + T+++RG++ + ++++ER + D ++ + I ++ + +PG
Sbjct: 354 VKKIGD-EFFTFIVDCKDPKACTVLLRGASKDVLNEVERNLQDAMSVARNILKNPKLLPG 412
Query: 546 AGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVVNKIY--- 376
GATE+ ++ L + + ++ G+E++ A+A E+IPR LA N G N ++ ++
Sbjct: 413 GGATELTVSAALKQKSSSVEGVEKWPYEAAALAFEAIPRTLAQNCGLNVIRIMTQLQGKD 472
Query: 375 KAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMA- 199
H G+ NA ID + + D KE+ I DSY +K K A+ AA +L++D I+
Sbjct: 473 MLHANGE-NAWVGIDGRSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIVSGI 531
Query: 198 KRAGGPKPRAP 166
K+ P AP
Sbjct: 532 KKKQAPGASAP 542
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 105 bits (253), Expect = 3e-23
Identities = 56/190 (29%), Positives = 106/190 (55%)
Frame = -3
Query: 726 VDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPG 547
V + GD F ++ + + T+++RG++ + ++++ER + D ++ + I ++ + +PG
Sbjct: 354 VKKFGD-EFFAFIVDCKDPKACTVLLRGASKDVLNEVERNLQDAMSMARNIWKNPKLLPG 412
Query: 546 AGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEVVNKIYKAH 367
GATE+ ++ L + + ++ G+E++ A+A E+IPR L N G N + ++ H
Sbjct: 413 GGATELTVSATLKQKSSSVEGVEKWPYEAAALAFEAIPRTLLQNCGLNVIRTMTQLQGKH 472
Query: 366 KEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMAKRAG 187
G+ NA ID + + D KE+ I DSY +K K A+ AA +L++D I+ +G
Sbjct: 473 ANGE-NAWVGIDGSSGDIVDMKERKIWDSYSVKAQTFKTAIEAACMLLRIDDIV----SG 527
Query: 186 GPKPRAPAGS 157
K +AP S
Sbjct: 528 IKKKQAPGAS 537
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 104 bits (250), Expect = 7e-23
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDG------- 595
+LGY D V VG++++V R +T+++RGS +D+ ER++ D
Sbjct: 351 KLGYADLVEEVSVGESKIVKIMGIKDMGRTATVLVRGSNQLVIDEAERSLHDALCVIRLV 410
Query: 594 ---------VNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALE 442
VN + + + G GA EIE++ QL +A L G+E Y +++FA ALE
Sbjct: 411 SGLINELQRVNWLRCLVNKRFLIAGGGAPEIEMSMQLAAWAKELQGMESYCIKEFAEALE 470
Query: 441 SIPRALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFW 262
IP LA+N+G N +V ++ H +G+KNAG ++ + + E+ ++ L+
Sbjct: 471 VIPYTLAENAGLNPISIVTELRNRHAKGEKNAGINV--RKGQITNILEENVVQPLLVSTS 528
Query: 261 GIKYAVGAATTILKVDQIIMAK 196
I A ILK+D I+ +
Sbjct: 529 AITLACECVRMILKIDDIVTVR 550
>10_08_0620 - 19321612-19323237
Length = 541
Score = 103 bits (248), Expect = 1e-22
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGD---TRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTF 583
+LG+ V VGD ++V + R +T+++RGS +D+ +R++ D
Sbjct: 355 KLGHAHLVEEISVGDGNNNKIVKITGIKNMGRTATVLVRGSNQMVIDEAQRSLHDAFCVI 414
Query: 582 KGIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGAN 403
+ + + G GA EIE++ QL +A L G+E Y VR+FA ALE IP LA+N+G +
Sbjct: 415 RCLVNKRFLIAGGGAPEIEMSMQLAAWAKELRGMESYCVREFAEALEVIPYTLAENAGLD 474
Query: 402 ATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTIL 223
V ++ H +G+KNAG ++ + + E+ ++ L+ + A IL
Sbjct: 475 PISTVTELRNRHAKGEKNAGINV--RKGRITNILEENVVQPLLVSTSAVTLACECVRMIL 532
Query: 222 KVDQIIMAK 196
K+D I+ +
Sbjct: 533 KIDDIVTVR 541
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 98.3 bits (234), Expect = 6e-21
Identities = 52/183 (28%), Positives = 108/183 (59%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 574
+LG+C+ + +G+ +++ F + + TIV+RG++++ +D+ ER++ D +
Sbjct: 335 KLGHCNVIEEIMIGEDKLIHFSGVAM-GQACTIVLRGASEHVLDEAERSLHDALCVLSQT 393
Query: 573 ARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATE 394
D R + G G E+ +A+ + + A PG + +A+ F+ AL++IP +ADN+G ++ E
Sbjct: 394 VNDTRVLFGGGWPEMVMAKAVDDLARKTPGKKSHAIDAFSRALQAIPTIIADNAGLDSAE 453
Query: 393 VVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVD 214
+++++ H + AG D+ + + G D +++GI +++ +K + A AA IL+VD
Sbjct: 454 LISQLRAEHHKENCTAGIDVITGSVG--DMQKRGISEAFKVKQAILLSATEAAEMILRVD 511
Query: 213 QII 205
+II
Sbjct: 512 EII 514
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 95.5 bits (227), Expect = 4e-20
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Frame = -3
Query: 756 QELGYCDAVHVDEVGDTRVVVFKMES-SESRISTIVIRGSTDNYMDDIERAIDDGVNTFK 580
++LG V G T+ + +E + SR TI IRG +++ +R++ D + +
Sbjct: 347 EKLGKAGIVREKSFGTTKDRMLYIEQCANSRAVTIFIRGGNKMMIEETKRSLHDALCVAR 406
Query: 579 GIARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANA 400
+ R+ V G G+ EI + + AD PG+EQYA+R FA AL++IP ALA+NSG +
Sbjct: 407 NLIRNNSIVYGGGSAEISCSVAVEAAADRYPGVEQYAIRSFADALDAIPLALAENSGLSP 466
Query: 399 TEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILK 220
+ + + K+ + + N ID + G KE+ + ++ + K I A ILK
Sbjct: 467 IDTLTAV-KSQQVKESNPHCGIDCNDVGTNHMKEQNVFETLIGKQQQILLATQVVKMILK 525
Query: 219 VDQII 205
+D +I
Sbjct: 526 IDDVI 530
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 95.5 bits (227), Expect = 4e-20
Identities = 56/193 (29%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGDTRVVVFK-MESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKG 577
+LG+C + +G+ R++ F +E ++ TIV+RG++++ +D+ ER++ D +
Sbjct: 312 KLGHCKVIEEIMIGEDRLIHFSGVEMGQA--CTIVLRGASEHVLDEAERSLHDALCVLSQ 369
Query: 576 IARDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANAT 397
D R + G G E+ +A+++ A PG + +A+ F+ AL+SIP +ADN+G ++
Sbjct: 370 TVNDTRVLYGGGWPEMVMAKEVDGLARKTPGKKSHAIEAFSRALQSIPTIIADNAGLDSA 429
Query: 396 EVVNKIYKAHKEGQKNAGFDIDSENN---------GVCDAKEKGIIDSYLLKFWGIKYAV 244
++++++ H + Q AG D+ S V D ++ GI +S+ K + A
Sbjct: 430 DLISQLRAEHHKEQSTAGIDVISGGGLELILRLLPQVGDMEKLGISESFKAKQAVLMSAT 489
Query: 243 GAATTILKVDQII 205
AA IL+VD+I+
Sbjct: 490 EAAEMILRVDEIV 502
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 95.1 bits (226), Expect = 5e-20
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 7/196 (3%)
Frame = -3
Query: 750 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 571
LG+ D V + + D V++ K + S +S I++RG+ D +D+I+R++ D + K
Sbjct: 330 LGHADEVVEERIADDDVILVKGTKNTSAVS-IILRGANDFMLDEIDRSLHDALCIVKRTL 388
Query: 570 RDGRFVPGAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATEV 391
V G GA E L+ L A TL EQ A+ +FA +L IP+ L+ N+ +ATE+
Sbjct: 389 ESNMVVAGGGAVEAALSVYLENLATTLGSREQLAIAEFAESLLIIPKVLSVNAAKDATEL 448
Query: 390 VNKIYKAHKEGQKNA------GFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATT 229
V K+ H Q A +D + + E G+I+ + K I++A AA T
Sbjct: 449 VAKLRAYHHTAQTKADKQHFSSMGLDLSKGIIRNNLEYGVIEPAMSKVKIIQFATEAAIT 508
Query: 228 ILKVDQII-MAKRAGG 184
IL++D +I + K G
Sbjct: 509 ILRIDDMIKLTKEESG 524
>11_06_0178 +
20942757-20942801,20943790-20943867,20943930-20944025,
20944114-20944221,20944322-20944420
Length = 141
Score = 92.3 bits (219), Expect = 4e-19
Identities = 42/85 (49%), Positives = 61/85 (71%)
Frame = -3
Query: 753 ELGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGI 574
ELGY D+V ++++G R E + ++ V+RGSTD+ +DD+ RA+DDGVNT+K +
Sbjct: 57 ELGYADSVSLEDIGGVR-----NEEGRNSVAIAVLRGSTDSILDDLGRAVDDGVNTYKSM 111
Query: 573 ARDGRFVPGAGATEIELAQQLLEFA 499
RD R +PGA ATEIELA++L EF+
Sbjct: 112 CRDSRIIPGAAATEIELAKRLKEFS 136
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 81.4 bits (192), Expect = 7e-16
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 1/187 (0%)
Frame = -3
Query: 750 LGYCDAVHVDEVGDTRVVVFKMESSESRISTIVIRGSTDNYMDDIERAIDDGVNTFKGIA 571
LG+ V+ +G+ + F R TI+I+G D+ + I+ A+ DG+ + K
Sbjct: 363 LGWAGLVYEHTLGEEKYT-FIENVKNPRSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTV 421
Query: 570 RDGRFVPGAGATEIELAQQLLE-FADTLPGLEQYAVRKFAVALESIPRALADNSGANATE 394
D V GAGA E+ + L++ T+ G Q V FA AL IP+ LA+NSG + +
Sbjct: 422 EDEAVVLGAGAFEVAAKKHLIDNVKKTVKGRAQLGVEAFADALLVIPKTLAENSGLDTQD 481
Query: 393 VVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFWGIKYAVGAATTILKVD 214
V+ + H G ++ + D + +GI D+Y +K I A+ +L VD
Sbjct: 482 VIVSLQNEHDRG---LVVGLNHHSGEPIDPQMEGIFDNYSVKRQIINSGPIIASQLLLVD 538
Query: 213 QIIMAKR 193
++I A R
Sbjct: 539 EVIRAGR 545
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Frame = -3
Query: 666 ISTIVIRGSTDNYMDDIERAIDDGVNTFKGIARDGRFVPGAGATEIELAQQLLEFADTLP 487
++ I + T+ + + + ++D +N K +G V G G T + LA ++ D L
Sbjct: 431 VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLAARVDAIKDNLE 489
Query: 486 GLEQYAVRKFAVALESIP-RALADNSGANATEVVNKIYKAHKEGQKNAGFDIDSENNGVC 310
EQ + S P + +A N+G N + V K+ N F ++
Sbjct: 490 NDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLS-----NDNFKFGYNAATGQYE 544
Query: 309 DAKEKGIIDSYLLKFWGIKYAVGAATTILKVDQIIMAKRAGGPKP 175
D GIID + +++A A T L D +++ + P P
Sbjct: 545 DLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEPAP 589
>04_04_1141 +
31180906-31181249,31181719-31181862,31181971-31182054,
31182196-31182236,31182726-31182803,31183050-31183139,
31183236-31183325,31183808-31183962,31184737-31184796
Length = 361
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 333 DSENNGVCDAKEKGIIDSYLLK 268
DSEN+G A +KG++DS +L+
Sbjct: 248 DSENSGTASATKKGVLDSIVLQ 269
>01_05_0793 +
25278846-25279504,25279598-25279702,25280949-25281071,
25281167-25281337,25281440-25281569,25281797-25282039,
25282084-25282202,25282269-25282331,25282423-25282486
Length = 558
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 411 GANATEVVNKIYKAHKEGQKNAGFDIDSENNGVCDAKEKGIIDSYLLKFW 262
G+N+TE NK+ + + G+D+ G +E +I Y+L W
Sbjct: 497 GSNSTEFANKVERTGSSTSDSLGYDVIDHQCGYRSDRE--MIGRYMLVLW 544
>09_04_0669 +
19335661-19335917,19336153-19336279,19336393-19336771,
19336857-19336915,19337413-19337449,19337629-19337996,
19338493-19338543
Length = 425
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 157 TSSWRSWFWPACSLCHNDLINLKNGCCCSNSILY 258
+S+ RS W C C DL++L + CSN+I +
Sbjct: 61 SSAARSRLW--CPFCSADLVDLDSRFACSNAIYH 92
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 190 CSLCHNDLINLKNGCCCSNS 249
CS+ HN+L+N++ C NS
Sbjct: 401 CSIWHNELLNIRKDQCSENS 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,345,144
Number of Sequences: 37544
Number of extensions: 382284
Number of successful extensions: 1022
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -