Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16d04
         (758 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            28   0.27 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            28   0.27 
L76433-1|AAC27659.1|  392|Anopheles gambiae tryptophan oxygenase...    27   0.83 
L76432-1|AAC27663.1|  392|Anopheles gambiae tryptophan oxygenase...    27   0.83 
AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.           25   1.9  
AY344834-1|AAR05805.1|  334|Anopheles gambiae ICHIT protein.           25   1.9  
AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.           25   1.9  
AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           25   1.9  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           25   1.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   3.3  
AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein prot...    25   3.3  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           24   4.4  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           24   4.4  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -3

Query: 630  YMDDIERAIDDGVNTFKGI-ARDGRFVPGAG----ATEIELAQQLLEFADTLPGLEQYAV 466
            Y DDI  AI D  N+   I + +G   P +     A   EL   L E+A  LP +     
Sbjct: 2339 YKDDIPDAIADTCNSVWTILSNEGLIGPKSNFSMTAINQELRDLLSEYASHLPAIIGALY 2398

Query: 465  RKFAVAL 445
             KFA AL
Sbjct: 2399 HKFATAL 2405


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -3

Query: 630  YMDDIERAIDDGVNTFKGI-ARDGRFVPGAG----ATEIELAQQLLEFADTLPGLEQYAV 466
            Y DDI  AI D  N+   I + +G   P +     A   EL   L E+A  LP +     
Sbjct: 2340 YKDDIPDAIADTCNSVWTILSNEGLIGPKSNFSMTAINQELRDLLSEYASHLPAIIGALY 2399

Query: 465  RKFAVAL 445
             KFA AL
Sbjct: 2400 HKFATAL 2406


>L76433-1|AAC27659.1|  392|Anopheles gambiae tryptophan oxygenase
           protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 549 GAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATE 394
           G   TE  LA  + ++ +  PGLEQ     +    ES+ + LA+   +  +E
Sbjct: 178 GTTETEPSLADLVQKWLERTPGLEQDGFNFWGKFQESVEQLLAEQEASAMSE 229


>L76432-1|AAC27663.1|  392|Anopheles gambiae tryptophan oxygenase
           protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 0.83
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 549 GAGATEIELAQQLLEFADTLPGLEQYAVRKFAVALESIPRALADNSGANATE 394
           G   TE  LA  + ++ +  PGLEQ     +    ES+ + LA+   +  +E
Sbjct: 178 GTTETEPSLADLVQKWLERTPGLEQDGFNFWGKFQESVEQLLAEQEASAMSE 229


>AY344835-1|AAR05806.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQW 147


>AY344834-1|AAR05805.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQW 147


>AY344833-1|AAR05804.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQW 147


>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQW 147


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTTFPTTTTTSAPTTPSQW 147


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 480 EQYAVRKFAVALESIPRALADNSGANATEVVNKIYKAHKEGQ 355
           E   + K     ES PR+     G N   +V +I + H++GQ
Sbjct: 496 ETTRIEKQLEQFESAPRSKLAVYGTNMPALVARIRQLHQQGQ 537


>AJ010903-1|CAA09389.1|  373|Anopheles gambiae ICHIT protein
           protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 127 TTTTKFPTTTTTSAPTTPSQW 147


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 126 TTTTRFPTTTTTSAPTTPSQW 146


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 695 TTTRVSPTSSTCTASQYPSSW 757
           TTT   PT++T +A   PS W
Sbjct: 126 TTTTRFPTTTTTSAPTTPSQW 146


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,550
Number of Sequences: 2352
Number of extensions: 15175
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78586767
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)