Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c24
(273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 30 0.068
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 29 0.089
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 29 0.12
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 28 0.21
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 25 1.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 1.9
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 25 2.5
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 24 3.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 24 4.4
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 23 7.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 23 7.8
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 29.9 bits (64), Expect = 0.068
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 258 GLLSM-RVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRP 85
GLLSM KD C F IT P D ++VVFG +I + + I +SRP
Sbjct: 104 GLLSMANAGKDSNGCQFF-ITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRP 161
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 29.5 bits (63), Expect = 0.089
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
G+LSM + F IT P P D ++ +FGR++ + + + S RP+
Sbjct: 86 GILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIE 145
Query: 78 EISAAK 61
+ K
Sbjct: 146 PLKIIK 151
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 29.1 bits (62), Expect = 0.12
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1
Query: 255 LLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVVE 76
LLSM + F IT P P D ++VVFG++I T I L + PVV
Sbjct: 100 LLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETK-NDDPVVP 158
Query: 75 I 73
+
Sbjct: 159 V 159
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 0.21
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLI 145
GL+ M T+++ F IT P P+++ + +FGR++
Sbjct: 97 GLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRVV 134
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 1.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
GLLSM D F IT P D +VVFG ++ + + I +P+
Sbjct: 119 GLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLE 178
Query: 78 EISAAK 61
++ K
Sbjct: 179 DVKIIK 184
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 1.9
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 29 SGTPNGLSTQCFAADISTTGRELSGAPKPRITSKVSHGRIN 151
+GTPN +S + +++TG P + S+V N
Sbjct: 283 TGTPNSMSKSPSLSSLASTGASYRPGPSKPLVSRVRDNYAN 323
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 2.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA 103
GLLSM + F IT P D ++VVFG + + + + LG+
Sbjct: 94 GLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGS 145
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 183 QFDLRNVVFGRLILPCETFEVIRGLG 106
++ + +++F R I P E F+V+R G
Sbjct: 24 EYAVNSILFQRGIYPAEDFKVVRKYG 49
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.8 bits (49), Expect = 4.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 204 ITFKPLPQFDLRNVVFGRLILPCETF 127
+T +PLP+ + R + +LPC+ +
Sbjct: 1323 VTVRPLPELNNRELRLEFSVLPCKMY 1348
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 23.0 bits (47), Expect = 7.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 29 SGTPNGLSTQCFAADISTTGRELSGAPKPRITSKVSH-GRINLPKTTFRRS 178
+G P+G+ ++D S G+EL+ P I KVS G N+ K +S
Sbjct: 207 AGFPDGVLNVITSSDASAHGKELTTNP---IVRKVSFTGSTNVGKILMGQS 254
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.0 bits (47), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 189 LPQFDLRNVVFGRLILP-CETFEVI 118
+P+ LRNV+F + LP C F I
Sbjct: 1522 MPRAGLRNVIFTEVFLPACFAFFTI 1546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 951,706
Number of Sequences: 5004
Number of extensions: 15282
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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