Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c24
(273 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 35 0.010
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 30 0.22
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 29 0.38
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 29 0.38
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145... 28 1.2
09_06_0296 - 22104796-22104916,22104967-22105022,22105094-221051... 27 2.0
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 27 2.7
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 27 2.7
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 27 2.7
01_07_0231 + 42176598-42178117,42178232-42179753 26 3.6
08_02_0734 - 20559249-20559868,20560812-20562132 26 4.7
07_01_0358 - 2631214-2632992 26 4.7
03_05_1102 - 30413154-30414062,30414519-30415010 26 4.7
01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355 26 4.7
07_03_1648 - 28382520-28382963,28383623-28383868 25 6.3
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 25 6.3
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 25 6.3
02_01_0160 + 1116160-1116678 25 6.3
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130... 25 8.3
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 25 8.3
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 25 8.3
04_04_0988 - 29941838-29941889,29942113-29942239,29942345-299423... 25 8.3
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 25 8.3
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 25 8.3
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 34.7 bits (76), Expect = 0.010
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
G+LSM D F IT P D ++VVFGR+I + + S RP+
Sbjct: 147 GMLSMANAGPDTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRPIT 206
Query: 78 EISAAKHCVDXPLGVPESLI 19
+I C + P G + ++
Sbjct: 207 DI-VIVDCGELPEGASDGVV 225
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA-PLSSRPV 82
GLLSM + F ITFK + D ++ VFG+LIL + + I + S PV
Sbjct: 107 GLLSMANAGPNTNGSQFFITFKHNSRLDRKSTVFGKLILGNDVLKRIEYVDVHGAGSTPV 166
Query: 81 VEI 73
V +
Sbjct: 167 VPV 169
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 29.5 bits (63), Expect = 0.38
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
G+LSM + F IT P D ++ +FGR+ E + + + S RP+
Sbjct: 94 GILSMANAGPNTNGSQFFITLAPCQSLDGKHTIFGRVSKGMEIVKRLGSVQTDKSDRPIH 153
Query: 78 EISAAKHCV 52
E+ + V
Sbjct: 154 EVKILRTVV 162
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 29.5 bits (63), Expect = 0.38
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
G+LSM + + F IT P D ++VVFGR+I + + RP
Sbjct: 165 GMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRPTS 224
Query: 78 EISAAKHCVDXPLGVPESLI 19
++ C + P G + ++
Sbjct: 225 DVEIV-DCGELPEGADDGVV 243
>05_06_0134 +
25912474-25912561,25912678-25913230,25914063-25914556,
25914804-25914942,25915511-25915582,25915671-25915742,
25917202-25917282,25917385-25917545,25917626-25917894,
25917996-25918122,25918193-25918261,25918366-25918558,
25918605-25919046
Length = 919
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 STIRLSGT-PNGLSTQCFAADISTTGRELSGAPKPRITSKVSHGRINL 154
S L+G+ PN LS + TG +L+G P + ++ G +NL
Sbjct: 452 SNNNLTGSIPNALSQLSSLTILDLTGNQLNGTIPPGLLKRIQDGFLNL 499
>09_06_0296 -
22104796-22104916,22104967-22105022,22105094-22105189,
22106431-22106505,22107339-22107639,22107728-22107798,
22109340-22109468,22109566-22109760,22109916-22110082,
22110175-22110271,22110689-22110697
Length = 438
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -1
Query: 252 LSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVVEI 73
LS V + +M G F + LP + + L PC+ V+ G+G L PV +
Sbjct: 82 LSNVVGRASKMIGNFMSYYTHLPHEATKGKMTFLLHGPCDKKAVVEGIGRTL-GLPVASV 140
Query: 72 SAAKHCVDXP 43
A+ D P
Sbjct: 141 DASSLIKDFP 150
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 38 PNGLSTQCFAADISTTGRELSGAPKPRITSKVSHGRINLP 157
P+G T A ST R A +PR S V HG ++P
Sbjct: 55 PSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVGHGGGSVP 94
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 237 TKDDEMCGIFNITFKPLPQFDLRNVVF 157
TK E IF+ F+P P F LR V F
Sbjct: 258 TKQCEYIAIFDADFQPEPNFLLRTVPF 284
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGAPLSSRPVV 79
G++SM + F I +K P + ++ VFG ++ T + + RP+
Sbjct: 429 GVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGMVVGGLTTLSAMEKVPVDDDDRPLE 488
Query: 78 EISAAK 61
EI K
Sbjct: 489 EIKILK 494
>01_07_0231 + 42176598-42178117,42178232-42179753
Length = 1013
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 38 PNGLSTQCFAADISTTGRELSGAP 109
P GLS F ++ +G +LSG+P
Sbjct: 181 PQGLSKSSFLLHLNLSGNQLSGSP 204
>08_02_0734 - 20559249-20559868,20560812-20562132
Length = 646
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 32 GTPNGLSTQCFAADISTTGRELSGAPKPRITSKVSHGRINLPKTTF 169
G P GL + + +G L+G P + S +NL + F
Sbjct: 135 GLPEGLFSLALLEKVDLSGNRLTGGVSPEFSRLASLTTLNLDRNGF 180
>07_01_0358 - 2631214-2632992
Length = 592
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 74 ISTTGRELSGAPKPRITSKVSHGRINLPKT 163
++T R +G+P+PR+ ++ R+ LP T
Sbjct: 87 LNTVLRIAAGSPRPRVALELHRRRLALPDT 116
>03_05_1102 - 30413154-30414062,30414519-30415010
Length = 466
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 115 RLRRPAQLASGGGDIGGK 62
RL RPA A+GGG GG+
Sbjct: 81 RLTRPAAAAAGGGGEGGE 98
>01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355
Length = 404
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 135 ETFEVIRGLGAPLSSRPVVEISAAKHCVDXPLGVPESLIV 16
+ FE+ RG P+ SR VE +CV P +P +L++
Sbjct: 231 DAFELFRGSPRPILSRDFVE-----YCVVAPDNLPRTLLL 265
>07_03_1648 - 28382520-28382963,28383623-28383868
Length = 229
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Frame = -3
Query: 115 RLRRPAQLAS-----GGGDIGGKTLRRQXVGCTG 29
R RRP+ GGGD GG+ +R + C+G
Sbjct: 127 RRRRPSSTCEFRSGGGGGDDGGRAMRYKMDDCSG 160
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLI 145
GLLSM D F IT L + D ++VVFG+++
Sbjct: 139 GLLSMANYAKDTNGSQFFITTVKLTRLDGKHVVFGKVL 176
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 29 SGTPNGLSTQCFAADISTTGRELSGAPKPRITSKVSHGRINLPKT 163
SG P ST ++ DIS+ G + ++ V H R+ L T
Sbjct: 132 SGLPQNRSTSNYSFDISSNGN--GAVTEDSQSASVGHNRVGLAVT 174
>02_01_0160 + 1116160-1116678
Length = 172
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 258 GLLSMRVTKDDEMCGIFNITFKPLPQFDLRNVVFGRLILPCETFEVIRGLGA--PLSSRP 85
G+LSM + F I P D ++VVFGR++ + + I +G+ +++P
Sbjct: 103 GILSMANAGPNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKP 162
Query: 84 VV 79
VV
Sbjct: 163 VV 164
>09_06_0108 -
20912236-20912364,20912470-20912601,20912718-20913071,
20913161-20913407,20913489-20913565,20913971-20914045,
20914118-20914219,20914329-20914447,20914861-20914984,
20915081-20915131,20915247-20915345,20915839-20915949
Length = 539
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 89 RELSGAPKPRITSKVSHGRINLPKTTFRRSN 181
++L G P + K+S ++ KTT +RSN
Sbjct: 275 KDLLGKSDPYVKLKMSDDKLPSKKTTVKRSN 305
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 252 LSMRVTKDDEMCGIFNITFKPLPQFDLRNV 163
+S KD E IF+ F+P P F R V
Sbjct: 311 MSCSYVKDYEYVAIFDADFQPYPDFLKRTV 340
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 25.0 bits (52), Expect = 8.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = -1
Query: 216 GIFNITFKPLPQFDLRNVVF---GRLILPCETFEVIRGLGAPLSSRPVVEISAAKHCVDX 46
G+ ++T KP DL+ F R +L C + L P +E+ A H
Sbjct: 242 GLISVTAKPQ---DLQCYFFRCTARELLACAVMRPVVNLANPRFINERIELLALSHANKA 298
Query: 45 PLGVPESL 22
GV ESL
Sbjct: 299 ERGVAESL 306
>04_04_0988 -
29941838-29941889,29942113-29942239,29942345-29942392,
29943014-29943088,29943178-29943241,29943316-29943469,
29943721-29943924,29944002-29944190,29944283-29944488,
29944666-29944760,29944846-29944968,29945274-29945322,
29945709-29945780
Length = 485
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 99 AGRLSRESLQKSRTAE 146
AGRLSR LQ+SR+ E
Sbjct: 464 AGRLSRSLLQRSRSTE 479
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 183 QFDLRNVVFGRLILPCETF 127
+FDLR +VF R I P E F
Sbjct: 663 KFDLRYIVFVRSICPLEIF 681
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 109 RRPAQLASGGGDIGGKTLR-RQXVGCTGK 26
RR A A GGG+ GG+ L R+ +G G+
Sbjct: 91 RRAAAAAGGGGEDGGERLELRELLGGGGE 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,606,278
Number of Sequences: 37544
Number of extensions: 114944
Number of successful extensions: 389
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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