Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c24
         (273 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.        29   0.041
DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor prot...    22   4.7  
AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            22   4.7  
AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.         21   6.2  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    21   8.3  

>AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 100 AQLASGGGDIGGKTLR--RQXVGC-TGKSNSRIKN 5
           A LA G G +GG++ R  R+  G  TGK + R++N
Sbjct: 290 AALAGGSGTVGGRSKRSVRRKAGTGTGKRSDRVRN 324


>DQ103706-1|AAZ43087.1|  344|Anopheles gambiae pk-1 receptor
           protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 135 ETFEVIRGLGAPLSSRPVV 79
           ETF V+RG+ A +S+   V
Sbjct: 116 ETFCVLRGIAAEMSANATV 134


>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 271 FCCCRSSVDARDER 230
           +CCCR S+  R+ +
Sbjct: 33  YCCCRGSMCNREHK 46


>AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.
          Length = 304

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +2

Query: 113 PRITSKVSHGRINLPKTTFRRSN*GSGLKVILNMPHISSSFVTRIDRR 256
           PR   K  H     PK+  R+   G G     N PH+  S  T   RR
Sbjct: 122 PRSVVKAKH-----PKSQERKVAYGEGTDDDYNRPHLFVSLATTQVRR 164


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 59  CFAADISTTGRELSGAPK 112
           CFAA +S+    L  APK
Sbjct: 505 CFAATLSSALASLVSAPK 522


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,379
Number of Sequences: 2352
Number of extensions: 3745
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 15730956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)