Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c23
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 152 5e-38
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 122 6e-29
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 119 4e-28
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 109 3e-25
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 104 1e-23
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 91 1e-19
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 80 2e-16
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 52 1e-07
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 2.4
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 3.2
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 27 3.2
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 4.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 5.6
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 25 9.9
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 152 bits (368), Expect = 5e-38
Identities = 74/116 (63%), Positives = 83/116 (71%)
Frame = -1
Query: 649 GLHFPSCHPQFPCCKEGTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 470
G F PQF + G NGTGGKSIYG KF DENF LKH PG+LSMANAG +TN
Sbjct: 48 GSTFHRVIPQF-MLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTN 106
Query: 469 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 302
GSQFFITTV T WLDG+HVVFG V EGM+VVK++E+ GS SG T RIVI CG +
Sbjct: 107 GSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNF 616
EKG+GY GS FHRVIP F
Sbjct: 41 EKGYGYAGSTFHRVIPQF 58
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 122 bits (293), Expect = 6e-29
Identities = 56/92 (60%), Positives = 69/92 (75%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
NGTGG+SIYG KFEDENF LKH P +LSMANAG +TNGSQFFITTV T LDG+HVVFG
Sbjct: 74 NGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFG 133
Query: 403 NVVEGMEVVKQIETFGSQSGKTSKRIVIKDCG 308
V++G V+ IE +++ +VI++CG
Sbjct: 134 KVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 654 YKGSIFHRVIPNF 616
YKGS FHRVI NF
Sbjct: 51 YKGSRFHRVIKNF 63
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 119 bits (286), Expect = 4e-28
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
+GTGGKSIYG++F DENF L H PG+LSMANAG D+NGSQFFITTVKT WLDG HVVFG
Sbjct: 94 DGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFG 153
Query: 403 NVVEGMEVVKQI 368
V+ G ++VK+I
Sbjct: 154 EVLSGYDIVKKI 165
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNF 616
EKGFGY+GSIFHRVIPNF
Sbjct: 66 EKGFGYEGSIFHRVIPNF 83
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 109 bits (263), Expect = 3e-25
Identities = 51/96 (53%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Frame = -1
Query: 583 NGTGGKSIYGNK-FEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 407
+GTG +I+ ++ F DENFTLKH PG+LSMANAG D+NG QFFITTV +LDG+HVVF
Sbjct: 78 DGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVF 137
Query: 406 GNVVEGMEVVKQIE-TFGSQSGKTSKRIVIKDCGQI 302
G V+EG ++VK+IE T + + + I +CG++
Sbjct: 138 GEVIEGYDIVKEIESTPVGANSRPKSNVAIVECGEM 173
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNF 616
+K GYK S FHR+I F
Sbjct: 50 QKPIGYKNSTFHRIIQGF 67
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 104 bits (249), Expect = 1e-23
Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G PT G GG SIYG+KF+DE + L HTG G+LSMANAG +TN SQFFIT T WL
Sbjct: 53 QGGDPTGTGRGGTSIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWL 112
Query: 427 DGRHVVFGNVVEGMEVVKQI 368
DG+H +FG VV G+ V K++
Sbjct: 113 DGKHTIFGRVVSGLSVCKRM 132
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2
Query: 654 YKGSIFHRVIPNF 616
Y G IFHRVIP+F
Sbjct: 38 YDGVIFHRVIPDF 50
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G P +GTGG+SI+ FEDE + LKH P +SMAN+G +TNGSQFFITT T WL
Sbjct: 506 QGGDPLGDGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWL 565
Query: 427 DGRHVVFGNVVEGMEVVKQIE 365
DG+H +F G++VV +IE
Sbjct: 566 DGKHTIFARAYAGLDVVHRIE 586
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 80.2 bits (189), Expect = 2e-16
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G P+ G GG+SI+G F+DE LKH G++SMAN G +TNGSQFFI L
Sbjct: 327 QGGDPSGTGRGGQSIWGKPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHL 386
Query: 427 DGRHVVFGNVVEGMEVVKQIETFGSQSGKTSK 332
D +H +FG VV G+ V+ +E + S K
Sbjct: 387 DNKHTIFGRVVGGLNVLDALEKVPTNSNDHPK 418
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 51.6 bits (118), Expect = 1e-07
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G PT G GG+SIYG F E L+ G++ MA + N SQFFIT T
Sbjct: 64 QGGDPTGTGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEW 123
Query: 427 DGRHVVFGNVV 395
+G+ +FG VV
Sbjct: 124 NGKQTLFGRVV 134
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 342 FPDWLPKVSICLTTSMPSTTFPKTTCLPS 428
FP WL K S CL +P T+ P T + S
Sbjct: 302 FP-WLKKNSFCLYLPIPLTSIPSTPSIRS 329
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 470 WFPVLHHHC 444
WFP +HHHC
Sbjct: 97 WFPEVHHHC 105
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 308 TTVFDNDSLRGLPRLAAKGLNLLDNFHAFNNIPKDNMSAIQPGGLDSGDEELG 466
T VFD + +L+ ++++DN +IPK+ A S + +G
Sbjct: 525 TVVFDKTGTLTVGKLSVTDISIVDNLEELLDIPKNIFWAFVKASESSSEHPIG 577
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 375 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCL 524
LT +P TTF T +P + +V ++++ PL+ + P PV L
Sbjct: 37 LTEQLP-TTFRITASIPHATQVRDYFIEHYYPLIENARTEDAKIPLPVSL 85
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 357 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 536
P S + +S +++ T+ P+S EV T P+ S+ A + E + G V
Sbjct: 162 PASSTEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPT 221
Query: 537 SSSNL 551
SSS++
Sbjct: 222 SSSSI 226
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 612 AARRGLHQPITALGESPSTAISLKTRISPLSTQDLAS 502
A+R+G E P + +SLK++ LST DL +
Sbjct: 2 ASRQGFSNVNEDEPELPPSVLSLKSKFESLSTGDLTN 38
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 302 NLTTVFDNDSLRGLPRLAAKGLNLLDNFHA--FNNIPKDNMSAIQPGGLDSGDEELGTIS 475
N+ ++ L G + G NL F A +++ P+ NM P ++ +GT +
Sbjct: 210 NMVEDYNVYGLSGSQQSFRLGNNLTKTFWATGYSDSPEANMYGSHPFYMEQRYIPIGTTN 269
Query: 476 ISTGISHG 499
T SHG
Sbjct: 270 TYTSASHG 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,912
Number of Sequences: 5004
Number of extensions: 60634
Number of successful extensions: 160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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