Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c23
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0359 + 22508900-22509439 155 2e-38
02_01_0160 + 1116160-1116678 152 2e-37
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 146 2e-35
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 143 1e-34
10_01_0309 + 3417602-3418147 128 5e-30
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 126 2e-29
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 121 5e-28
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 117 7e-27
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 106 1e-23
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 104 7e-23
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 96 2e-20
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 96 3e-20
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 91 6e-19
06_01_0214 + 1634171-1634173,1634263-1634742 86 2e-17
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 80 1e-15
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 68 6e-12
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 65 6e-11
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 58 8e-09
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 53 2e-07
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 49 4e-06
02_01_0086 + 613113-613532 45 5e-05
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 37 0.017
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 35 0.051
01_01_0077 - 585670-585787,585921-586687 35 0.067
11_01_0535 + 4234282-4235082 30 1.5
08_02_0053 + 11721658-11721689,11721960-11722710 30 1.9
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865... 29 2.5
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 4.4
07_03_1665 + 28480745-28480916,28481347-28481612 28 7.7
>09_06_0359 + 22508900-22509439
Length = 179
Score = 155 bits (377), Expect = 2e-38
Identities = 72/121 (59%), Positives = 92/121 (76%)
Frame = -1
Query: 661 LRLQGLHFPSCHPQFPCCKEGTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAG 482
L +G F P F C+ G NGTGG+SIYG++F DENF L+HTGPGVLSMANAG
Sbjct: 55 LHYKGSAFHRIIPNF-MCQGGDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANAG 113
Query: 481 ADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 302
+TNGSQFFI T +T+WLDG+HVVFG VV+G VV+++E GS SG T++R++I+DCGQ+
Sbjct: 114 PNTNGSQFFICTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSGSGGTAERVLIEDCGQL 173
Query: 301 A 299
A
Sbjct: 174 A 174
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 666 KGFGYKGSIFHRVIPNF 616
K YKGS FHR+IPNF
Sbjct: 53 KPLHYKGSAFHRIIPNF 69
>02_01_0160 + 1116160-1116678
Length = 172
Score = 152 bits (369), Expect = 2e-37
Identities = 73/121 (60%), Positives = 86/121 (71%)
Frame = -1
Query: 661 LRLQGLHFPSCHPQFPCCKEGTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAG 482
L +G F P+F C+ G NGTGG+SIYG KF DE F KH PG+LSMANAG
Sbjct: 53 LHYKGSTFHRVIPEF-MCQGGDFTRGNGTGGESIYGEKFADEVFKFKHDSPGILSMANAG 111
Query: 481 ADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 302
+TNGSQFFI TV SWLDG+HVVFG VVEGM+VVK IE GS+ G T+K +VI DCGQ+
Sbjct: 112 PNTNGSQFFICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKPVVIADCGQL 171
Query: 301 A 299
+
Sbjct: 172 S 172
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 666 KGFGYKGSIFHRVIPNF 616
K YKGS FHRVIP F
Sbjct: 51 KPLHYKGSTFHRVIPEF 67
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 146 bits (353), Expect = 2e-35
Identities = 70/120 (58%), Positives = 84/120 (70%)
Frame = -1
Query: 661 LRLQGLHFPSCHPQFPCCKEGTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAG 482
L +G F P F + G +G GG+SIYG KF DENF +KHTGPG+LSMANAG
Sbjct: 100 LHFKGSAFHRIIPSF-MIQGGDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANAG 158
Query: 481 ADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 302
DTNGSQFFITTV TSWLDG+HVVFG V+ GM+VV +IE G QSG ++VI D G++
Sbjct: 159 RDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYKIEAEGQQSGSPKSKVVIADSGEL 218
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 666 KGFGYKGSIFHRVIPNF 616
K +KGS FHR+IP+F
Sbjct: 98 KALHFKGSAFHRIIPSF 114
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 143 bits (347), Expect = 1e-34
Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 1/95 (1%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
NGTGGKSIYG F+DENF L HTGPGV+SMANAG +TNGSQFFI TVKT WLDGRHVVFG
Sbjct: 153 NGTGGKSIYGRTFKDENFKLVHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDGRHVVFG 212
Query: 403 NVVEGMEVVKQIETFGSQSG-KTSKRIVIKDCGQI 302
V+EGM++VK IE+ + G + K++VI +CG++
Sbjct: 213 QVIEGMDIVKMIESQETDRGDRPKKKVVISECGEL 247
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNF 616
EKGFGYKGS FHRVI +F
Sbjct: 125 EKGFGYKGSSFHRVIKDF 142
>10_01_0309 + 3417602-3418147
Length = 181
Score = 128 bits (308), Expect = 5e-30
Identities = 66/124 (53%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Frame = -1
Query: 670 RERLRLQGLHFPSCHPQFPCCKEGTSPTHNGTGGKSIY---GNKFEDENFTLKHTGPGVL 500
+ RL +G F P F C+ G NGTGG+S F DE F +KH GPGV+
Sbjct: 57 KSRLHYKGSAFHRVVPGF-MCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVV 115
Query: 499 SMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVI 320
SMANAG +TNGSQFFIT K WLDGRHV FG VV GM V+ I+ G+ SGKT K +VI
Sbjct: 116 SMANAGPNTNGSQFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVI 175
Query: 319 KDCG 308
DCG
Sbjct: 176 TDCG 179
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 126 bits (304), Expect = 2e-29
Identities = 63/120 (52%), Positives = 80/120 (66%)
Frame = -1
Query: 661 LRLQGLHFPSCHPQFPCCKEGTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAG 482
L +G F P F + G + + NGTG SIYG F DENF + H+ PG+LSMAN
Sbjct: 89 LSYKGTPFHRIIPGF-MIQGGDTVSGNGTGCDSIYGGMFPDENFKINHSAPGLLSMANYA 147
Query: 481 ADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQI 302
DTNGSQFFITTVK + LDG+HVVFG V+ GM+VV +IE GSQSG +++I D G++
Sbjct: 148 KDTNGSQFFITTVKLTRLDGKHVVFGKVLSGMDVVYKIEAEGSQSGTPRSKVLISDSGEL 207
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 121 bits (292), Expect = 5e-28
Identities = 58/95 (61%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
+GTGG+SIYG FEDENF LKH G+LSMANAG DTNGSQFFITT +T LDG+HVVFG
Sbjct: 122 DGTGGESIYGLNFEDENFVLKHERKGMLSMANAGPDTNGSQFFITTTRTPHLDGKHVVFG 181
Query: 403 NVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCGQI 302
V++GM VV+ +E +S + IVI DCG++
Sbjct: 182 RVIKGMGVVRSMEHVSVGESDRPITDIVIVDCGEL 216
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 117 bits (282), Expect = 7e-27
Identities = 54/95 (56%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
+GTGG+SIYG KFEDENF LKH G+LSMAN+G +TNGSQFFITT +T LDG+HVVFG
Sbjct: 140 DGTGGESIYGLKFEDENFVLKHERKGMLSMANSGPNTNGSQFFITTTRTPHLDGKHVVFG 199
Query: 403 NVVEGMEVVKQIETFG-SQSGKTSKRIVIKDCGQI 302
V++GM VV+ +E ++ + + + I DCG++
Sbjct: 200 RVIKGMGVVRSVEHAPVGEADRPTSDVEIVDCGEL 234
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 106 bits (255), Expect = 1e-23
Identities = 50/77 (64%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Frame = -1
Query: 592 PTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRH 416
P +GTGG+SI+G +FEDE + +L+H P LSMANAG +TNGSQFFITTV T WLD +H
Sbjct: 551 PLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKH 610
Query: 415 VVFGNVVEGMEVVKQIE 365
VFG VV+GM+VV+QIE
Sbjct: 611 TVFGRVVKGMDVVQQIE 627
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 104 bits (249), Expect = 7e-23
Identities = 49/80 (61%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G PT G GG+SIYG KFEDE LKHTG G+LSMANAG +TNGSQFFIT L
Sbjct: 61 QGGDPTGTGRGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSL 120
Query: 427 DGRHVVFGNVVEGMEVVKQI 368
DG+H +FG V +GME+VK++
Sbjct: 121 DGKHTIFGRVSKGMEIVKRL 140
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 96.3 bits (229), Expect = 2e-20
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 404
+G+GG+SIYG FEDENF L+H G+LSMANAG +TNGSQFFIT S LD + VFG
Sbjct: 82 DGSGGESIYGGTFEDENFVLRHDERGLLSMANAGPNTNGSQFFITFKHNSRLDRKSTVFG 141
Query: 403 NVVEGMEVVKQIETFGSQSGKTSKRIV---IKDCGQIA*FKSL 284
++ G +V+K+IE + G S +V I DCG++ K L
Sbjct: 142 KLILGNDVLKRIE-YVDVHGAGSTPVVPVRIVDCGELVDGKCL 183
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNFHA 610
+K YKGS+FHRVI F A
Sbjct: 54 KKPLYYKGSLFHRVIKGFMA 73
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 95.9 bits (228), Expect = 3e-20
Identities = 44/56 (78%), Positives = 47/56 (83%)
Frame = -1
Query: 601 GTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 434
G +NGTGG+SIYG F+DENFTLKHTGPGVLSMANAG DTNGSQFFI TVK S
Sbjct: 127 GDFQNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANAGPDTNGSQFFICTVKFS 182
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2
Query: 669 EKGFGYKGSIFHRVIPNF 616
+KG+GYKG FHR+I +F
Sbjct: 105 DKGYGYKGCSFHRIIKDF 122
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 91.5 bits (217), Expect = 6e-19
Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Frame = -1
Query: 505 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE-TFGSQSGKTSKR 329
V++MAN+G D+NGSQF+ITT+KTSWLDG HVVFG V++GM+ V IE G+ +GK K+
Sbjct: 117 VIAMANSGPDSNGSQFYITTIKTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKPRKK 176
Query: 328 IVIKDCGQI 302
+VI D G+I
Sbjct: 177 VVITDSGEI 185
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 666 KGFGYKGSIFHRVIPNF 616
K YKGS FHR+IP F
Sbjct: 85 KSLHYKGSRFHRIIPGF 101
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G PT G GG SI+G KF DE +LKH GV+SMAN+G +TNGSQFFIT K L
Sbjct: 52 QGGDPTGTGKGGTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHL 111
Query: 427 DGRHVVFGNVVEGMEVVKQIE 365
+G + VF V+ G EV+ +E
Sbjct: 112 NGHYTVFAKVIHGFEVLDLME 132
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWL 428
+G PT G+GG+SI+G F+DE N L H+G GV+SMAN+G TNGSQFFI L
Sbjct: 396 QGGDPTGTGSGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHL 455
Query: 427 DGRHVVFGNVVEGMEVVKQIE 365
+ +H VFG VV G+ + +E
Sbjct: 456 NFKHTVFGMVVGGLTTLSAME 476
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = -1
Query: 604 EGTSPTHNGTGGKSIYGNKFEDENFT-LKHTGPGVLSMANAGAD-TNGSQFFITTVKTSW 431
+G PT +GTGG+SIYG F DE T L+ G+++ ANAG +NGSQFFI+ + W
Sbjct: 64 QGGDPTGSGTGGESIYGAPFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDW 123
Query: 430 LDGRHVVFGNV 398
LD ++ +FG V
Sbjct: 124 LDKKNTIFGKV 134
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 64.9 bits (151), Expect = 6e-11
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Frame = -1
Query: 592 PTHNGTGGKSIY----GNK---FEDE-NFTLKHTGPGVLSMANAGADTNGSQFFIT-TVK 440
PT G GG S+Y G++ F+DE L+H+ G ++MA+AG + N SQF+IT
Sbjct: 56 PTGTGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDD 115
Query: 439 TSWLDGRHVVFGNVVEGMEVVKQI-ETFGSQSGKTSKRIVIK 317
+LD +H VFG V EG + + +I ET+ G+ K I IK
Sbjct: 116 VDYLDDKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIK 157
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 57.6 bits (133), Expect = 8e-09
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = -1
Query: 547 FEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVK-TSWLDGRHVVFGNVVEGMEVVK 374
F+DE + L+H+ G ++MA+AG + N SQF+IT +LD +H VFG V EG + +
Sbjct: 108 FDDEIHPELRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTIT 167
Query: 373 QI-ETFGSQSGKTSKRIVIK 317
+I ET+ G+ K I I+
Sbjct: 168 KINETYVDDKGRPFKDIRIR 187
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 485
+GTG SIYG KF+DENF KHTGPG+LSM +
Sbjct: 109 DGTGCTSIYGTKFDDENFIAKHTGPGLLSMVRS 141
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -1
Query: 463 QFFITTVKTSWLDGRHVVFGNVV-EGMEVVKQIETFGSQSGKTSK-RIVIKDCGQI 302
QFFIT K WLD +HVVFG V+ +GM V++IE + K VI +CG++
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM 255
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = -1
Query: 445 VKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSKRIVIKDCGQIA 299
V TS + +HVVFG VV GM ++K++E GS +GK + + I DCG+++
Sbjct: 87 VSTSCVS-KHVVFGKVVTGMPLLKKLEAVGSDTGKPTCEVKIVDCGEVS 134
>02_01_0086 + 613113-613532
Length = 139
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = -1
Query: 541 DENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 365
+ENF L H P + N A+ N SQFF + W DG +VVFG ++ G +K IE
Sbjct: 63 NENFLLPHDRPW---LPNGSAENNISQFF---TRVPWFDGNYVVFGCIISGFHNLKAIE 115
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -1
Query: 529 TLKHTGPGVLSMA-NAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 365
T+KH G+LSM ++ ++ GS F I LDG++ VFG + +G + ++++E
Sbjct: 156 TVKHVR-GILSMGRHSDPNSGGSSFSILLGDAPHLDGQYAVFGRLTKGDDTLRKLE 210
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 35.1 bits (77), Expect = 0.051
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -1
Query: 583 NGTGGKSIYGNKFEDEN-FTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 407
NG + I K EN + KH + + N + G FITT L+ + VVF
Sbjct: 152 NGAAQEWILKAKASGENALSPKHEAFMIGTTKNP--NNKGFDLFITTAPIPDLNDKLVVF 209
Query: 406 GNVVEGMEVVKQIE 365
G V+ G ++V++IE
Sbjct: 210 GQVINGQDIVQEIE 223
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 484 GADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 368
G NG++F ITT LD +V G VV+GM+V+ +I
Sbjct: 202 GVVPNGTEFVITTGDAPELDASALVVGRVVDGMDVLGKI 240
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 309 PQSLITILLEVFPDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNW-EPLVSAP 485
P +L L+E WLP + + TT+ ST + T LP++ +L V + PL
Sbjct: 50 PAALAWCLMESPTLWLPPLVLSATTTSLSTPTLRVTILPAALYMLHYVHRTLVHPL---R 106
Query: 486 ALAMERTPGPV-CLRVKFS-SSNLL 554
L + R P P+ L + F S NLL
Sbjct: 107 LLRLRRAPAPMPILIIMFGFSFNLL 131
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Frame = -1
Query: 532 FTLKHTGPGVLSMANAGADTNGS----------QFFITTVKTSW--LDGRHVVFGNVVEG 389
F LKH PG LS+ D + +F +TT LDG+++VFG V+EG
Sbjct: 201 FELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEG 260
>04_04_1212 - 31786063-31786195,31786275-31786398,31786486-31786597,
31786691-31786822,31786929-31787111,31787351-31787479,
31787618-31787788,31788142-31788244,31788628-31788737,
31789158-31789265,31789337-31789512,31790082-31790352,
31790524-31790738,31791042-31792574,31792665-31792728,
31793171-31793251
Length = 1214
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 622 QFPCCKEGTSPTHNGTGGKSIYGNKFE--DENFTLKHTGPGVLSMANAGADTNGSQFFIT 449
Q + G+ P TGG +Y F+ D+ + G + GAD+NG + +
Sbjct: 1113 QLTAMRYGSIPIVRKTGG--LYDTVFDVDDDKDRAREQGLEPNGFSFEGADSNGVDYALD 1170
Query: 448 TVKTSWLDGR 419
T+W D R
Sbjct: 1171 RAITTWYDAR 1180
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 372 CLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAM 497
C T ++P +T PK+ L +S L V M+N + S ALA+
Sbjct: 2901 CFTAALPLSTIPKS--LNNSHFALEVTMRNGKKHASLRALAI 2940
>07_03_1665 + 28480745-28480916,28481347-28481612
Length = 145
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 601 GTSPTHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTS 434
G P +NGT KS F + L+ G V ++A A T+G +F + T+
Sbjct: 38 GYVPCNNGTSMKSGSAPGFPNAVVQLQCAGDAVAAVAAGSATTDGKGWFRMAMNTT 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,186
Number of Sequences: 37544
Number of extensions: 403619
Number of successful extensions: 1003
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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