Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c19
(759 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30260.1 68414.m03701 expressed protein 35 0.067
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 29 2.5
At2g28310.2 68415.m03438 expressed protein contains Pfam profile... 29 3.4
At2g28310.1 68415.m03437 expressed protein contains Pfam profile... 29 3.4
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 29 3.4
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 29 3.4
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 29 3.4
At5g37050.1 68418.m04444 hypothetical protein hypothetical prote... 28 5.9
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A... 28 5.9
>At1g30260.1 68414.m03701 expressed protein
Length = 97
Score = 34.7 bits (76), Expect = 0.067
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -1
Query: 588 DIVKEGSNKVGTNSIFLGTVYDYGVKSP-------NAASTSSNVTMTRGTANFDIKEFKS 430
D +KE +VGT+SIF + + SP + +S S++ + T G F + E +
Sbjct: 31 DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKFPVTENRG 90
Query: 429 MFIVFK 412
F VFK
Sbjct: 91 SFPVFK 96
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -1
Query: 405 TPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLE 226
TPT++++ G ++ S + L+ P T P+ EVR R S ++V A Q L +
Sbjct: 1614 TPTRSLDGTGRPDRDIRSSRI-LLSPKTEPVKYSEVRSSR-SESSIVRASQVPALQQLRD 1671
Query: 225 NNF-TAINADQTAY 187
F ++++A Q A+
Sbjct: 1672 VAFPSSLSAIQNAF 1685
>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +2
Query: 362 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 541
+N N + T ++G++ I + L SL K +P +++ LDV A GD +P + R
Sbjct: 13 TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSPEDFG-SR 70
Query: 542 KM--LLVPT------LLEPSLTMSSID 598
K + VPT LL P + ++ D
Sbjct: 71 KFPEIYVPTNPRGAELLPPGIVVAKTD 97
>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +2
Query: 362 SNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 541
+N N + T ++G++ I + L SL K +P +++ LDV A GD +P + R
Sbjct: 13 TNENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSPEDFG-SR 70
Query: 542 KM--LLVPT------LLEPSLTMSSID 598
K + VPT LL P + ++ D
Sbjct: 71 KFPEIYVPTNPRGAELLPPGIVVAKTD 97
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = -1
Query: 585 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 430
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 429 MFIVFKGITPTKTVEDNGMLRF 364
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = -1
Query: 585 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 430
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 429 MFIVFKGITPTKTVEDNGMLRF 364
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = -1
Query: 585 IVKEGSNKVGTNSIFLGTVYDYGVKSPNAAST----SSNVTMTRGTA----NFDIKEFKS 430
+V + S N + L V+DY P+A T SS + +G A N+D K +K+
Sbjct: 75 VVNQDSFYHNVNEVELVRVHDYNFDHPDAFDTEQLLSSMEKLRKGQAVDIPNYDFKSYKN 134
Query: 429 MFIVFKGITPTKTVEDNGMLRF 364
+ + P+ + G+L F
Sbjct: 135 NVFPPRRVNPSDVIILEGILIF 156
>At5g37050.1 68418.m04444 hypothetical protein hypothetical protein
T28J14.60 - Arabidopsis thaliana, PIR:T48483
Length = 165
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 293 SRTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPL 415
SRT R+ +GP + S ML+T+N + ++S +L G + +
Sbjct: 29 SRTLRTSAGPPVASSSLFRMLATTNVSTDVASMMLDGTVKI 69
>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 510
Score = 28.3 bits (60), Expect = 5.9
Identities = 27/108 (25%), Positives = 46/108 (42%)
Frame = -1
Query: 612 AEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 433
A K + D K+G+ K N+ + GV +P A S N IK+
Sbjct: 58 AGKSAASDSGFKDGNLKSSGNN---NNNNNNGVFTPYEALPSFKDVPNTEKQNLFIKKLN 114
Query: 432 SMFIVFKGITPTKTVEDNGMLRFEVDSMIVCLIDPNTGPLSEREVREL 289
+VF PTK +++ + R + ++ + PN G SE ++E+
Sbjct: 115 LCRVVFDFTDPTKNIKEKDIKRQTLLELVDYVNSPN-GKFSEVGIQEV 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,743
Number of Sequences: 28952
Number of extensions: 329208
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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