Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c18
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 139 5e-34
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.062
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.8
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 3.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 5.4
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.4
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 9.4
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 9.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.4
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 139 bits (336), Expect = 5e-34
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 1/188 (0%)
Frame = -1
Query: 716 VHGRFYKLASEYYRVRGPTGRYYRAALRYVGCADGGEALPATERADIAFRLALSGVLAPD 537
+H +Y ++++YY+ + +YYR L Y+ C D + TE + A L+++ +L D
Sbjct: 157 IHSSYYSVSADYYKAKADYAQYYRHCLLYLSCIDLDKC-SHTELVERAVDLSVAAILG-D 214
Query: 536 VYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERIRAKSN-CDELHKADRQLR 360
+Y+ GELL HP+ L GT +EW +LV A++VGD+ FER+ + N L + L
Sbjct: 215 IYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERLMGQINKMPLLQSSVALLG 274
Query: 359 QKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQVRS 180
QKI ++ L+E+ F +QR L+F+ IAR RIP +EVELLIM+AL+ LI G ID+V
Sbjct: 275 QKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQ 334
Query: 179 CATVQWVR 156
T+ V+
Sbjct: 335 IVTISSVQ 342
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.062
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +1
Query: 418 SKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARSVA 597
S +P+S + + LTSS + +P ++S S +S ++ +S +I + S +
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
Query: 598 GRASPPSAHPTYRSAA 645
+SP S T S++
Sbjct: 279 SSSSPTSTSSTISSSS 294
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 476 WACPSENVGLGEPTIHPNHIHPEPALQREL 565
W CP EN+ PT P+H+ P ++ + L
Sbjct: 701 WRCPRENLTKWYPTRLPDHMAPMESINQIL 730
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 605 PHPRRRTQRTEALRGSNGQWDHGLCNIPRLTY 700
P +R+T+ T+ALR G H LC I R+ +
Sbjct: 791 PRAQRKTRATDALRKCEGN-AHLLCTIARMLW 821
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 305 QRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHI 195
+ LS + + +E + +DE+E+ L E+L GH+
Sbjct: 976 EEALSIQLLQKETMLRIDELEIERNNTLLERLAIGHV 1012
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 409 RILSKAPTSPTDTALTSSQAHSLGVPLRECRIG*ANNSPKSYTS 540
RI PT+ T + SLG+ + E +G P+SYTS
Sbjct: 485 RIRVGGPTNGVLTYTVQADVWSLGLTILEMALGAYPYPPESYTS 528
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 494 SLRGTPNEWACELVKAVSVGD 432
SLR WAC++ ++VGD
Sbjct: 91 SLRHVEKSWACKICTFINVGD 111
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -2
Query: 787 YDAAEKNXLNI*KVHSKMLMV*LQFTDDFIS*PRNITESVVPLAVTTAQRFGT 629
YDAA+ N+ + + M + DD + R I E V+PLAV+ R+ T
Sbjct: 1069 YDAAKVCIRNLKSISLAIAMTRVYEGDDGPTLKRLINEYVLPLAVSQNDRWLT 1121
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 761 EHLESTLEDADGVTPVHGRFYKLASEYY 678
E +++ ++ DG HG F L SEY+
Sbjct: 756 ETMDTVIKLKDGELKAHGLFLSLRSEYF 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,069
Number of Sequences: 5004
Number of extensions: 62578
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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