Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c18
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971... 144 9e-35
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596... 137 8e-33
12_02_0315 - 17417161-17417401,17419426-17419616 31 1.4
12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634 30 1.8
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 30 1.8
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 30 2.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 2.4
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.2
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988... 29 3.2
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 29 4.2
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 29 5.6
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 28 7.4
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 28 7.4
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 28 7.4
04_04_0188 - 23433753-23436572 28 7.4
01_02_0129 + 11410345-11410487,11410908-11411014,11414512-114147... 28 7.4
04_04_1621 + 34842062-34842066,34842270-34842921 28 9.7
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 28 9.7
>01_05_0085 -
17995800-17995985,17996724-17996823,17996919-17997115,
17997836-17997916,17998046-17998492,17998774-17998920
Length = 385
Score = 144 bits (348), Expect = 9e-35
Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 6/245 (2%)
Frame = -1
Query: 752 ESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRYVGCADGGEALPATERADI 576
+STL+ V P VH FY ++S+Y++ +Y+ AL Y+ E+L + + D+
Sbjct: 142 KSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFYKNALLYLAYTTV-ESLSESFKLDL 200
Query: 575 AFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERI----- 411
AF L+L+ +L ++Y+ GELLAHPI++SL GT EW +++A + G++ ++ +
Sbjct: 201 AFDLSLAALLGDNIYNFGELLAHPIINSLIGTKVEWVYHMLQAFNTGNLALYQELCKVHN 260
Query: 410 RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIM 231
A S L + +R+L +KI ILCLME+ F + S R + IA ++ + +VE L+M
Sbjct: 261 AALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPLSVIAERTKLSISDVEYLLM 320
Query: 230 KALAEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLATVQP 51
K+L+ LI G ID+V S V WV+P +DAW V + P
Sbjct: 321 KSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVHTTLLSVEAETP 380
Query: 50 DLIIA 36
DL+ A
Sbjct: 381 DLVAA 385
>03_02_0154 +
5967512-5967658,5968206-5968652,5968766-5968846,
5969058-5969075,5969552-5969748,5969844-5969943,
5970676-5970861
Length = 391
Score = 137 bits (332), Expect = 8e-33
Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 12/251 (4%)
Frame = -1
Query: 752 ESTLEDADGVTP-VHGRFYKLASEYYRVRGPTGRYYRAALRYVGCADGGEALPATERADI 576
+STL+ V P VH Y ++S+Y++ R +Y+ AL Y+ E+L + + D+
Sbjct: 142 KSTLDSMTDVDPTVHASLYWISSQYHKARQEFAEFYKNALLYLAYTTV-ESLSESFKLDL 200
Query: 575 AFRLALSGVLAPDVYDLGELLAHPI------LHSLRGTPNEWACELVKAVSVGDVGAFER 414
AF L+L+ +L ++Y+ GELLAHPI ++SL GT EW +++A + G++ ++
Sbjct: 201 AFDLSLAALLGDNIYNFGELLAHPINCKASKINSLIGTKVEWVYHMLQAFNTGNLALYQE 260
Query: 413 I-----RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDE 249
+ A S L + +R+L +KI ILCLME+ F+++S R + IA ++ + +
Sbjct: 261 LCRVHNAALSAQPALVQNERKLLEKINILCLMEIIFSRASEDRTIPLSVIAERTKLSISD 320
Query: 248 VELLIMKALAEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADL 69
VE L+MK+L+ LI G ID+V S V WV+P +DAW V
Sbjct: 321 VEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERLDAWVGKVHTTLLS 380
Query: 68 LATVQPDLIIA 36
+ PDL+ A
Sbjct: 381 VEAETPDLVAA 391
>12_02_0315 - 17417161-17417401,17419426-17419616
Length = 143
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 457 SSQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARSVAGRASPPS 618
+ QA G P ++ R G N K YT ++ P + A A + A + PPS
Sbjct: 72 TDQAWEFGKPSQKRRFGSQGNEEK-YTRASTEPPAVAAAAAKAAAAAAKRPPPS 124
>12_02_0707 - 22330267-22330872,22331154-22332870,22335417-22335634
Length = 846
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Frame = -1
Query: 560 LSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERI----RAKSNC 393
LS ++AP DL + H + HS+ + LV A V V I A +
Sbjct: 447 LSRIMAPMSSDLLHRIDHEVWHSVVEESMQLVALLVVAPGVTGVRLRREISGNKEAVTTM 506
Query: 392 DELHKAD--RQLRQKIAILCLMEMAFNKSSSQRK--LSFEEIAR 273
D + K + L Q +AI L ++AF+KS S S EE+A+
Sbjct: 507 DSIPKCSKCKPLLQIMAIKILSQLAFDKSLSMSTSVASREELAK 550
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 406 ARILSKAPTSPTDTAL--TSSQAHSLG-VPLRECRIG*ANNSPKSYTSGASTPERASLKA 576
A + +P SP+ +L S + SLG V ++ I AN P++ S S P+ +
Sbjct: 123 AAAAATSPASPSGGSLPQNSLRKQSLGKVVVQPSIIVTANPPPRNVVSTTSVPQNSIAAK 182
Query: 577 ISARSVAGRASPP 615
++ SVA + PP
Sbjct: 183 LACSSVAAASPPP 195
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 455 PVHRPIHWACPSENVGLGEPTIHPNHIHPE 544
PV + +W ++N+ G PT+H +H PE
Sbjct: 387 PVGKSSYWNNRADNIFHGSPTLHNSHSFPE 416
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -1
Query: 410 RAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIM 231
+A+S+ EL + L KIA+L + + + Q + SFE + + L+ + ++
Sbjct: 443 KAQSSVKELESTNGDLNDKIAVLQNEKNSLSSELQQLEASFENLGNDLEQELERISIMHK 502
Query: 230 KALAEKLIRGHIDQVRSCATVQ 165
+L+ ++ ATVQ
Sbjct: 503 NNEDLELVNSNLQ--NDLATVQ 522
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 511 ANNSPKSYTSGASTPERASLKAIS----ARSVAGRASPPSAHPTYRS 639
A +SP S +S +STP R ++ A S R GRA P P+ RS
Sbjct: 112 APSSPSSSSSSSSTPVRDAVAAESQSAPRRLAGGRAPPDGLWPSMRS 158
>01_01_1222 +
9877607-9877691,9879235-9879390,9880070-9880148,
9881471-9881711,9881794-9881868,9881960-9882094,
9882634-9882821,9882915-9882983,9883060-9883150,
9883262-9883396,9883675-9883740,9883823-9883935,
9884020-9884110
Length = 507
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 281 IAREARIPLDEVELLIMKALAEKLIRGHIDQV 186
+ E P +VE L++ + + I+GHIDQV
Sbjct: 438 LTEELNFPEKDVEQLLVSLILDNRIQGHIDQV 469
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 490 RECRIG*ANNSPKSYTSGASTPE--RASLKAISARSVA-GRASPP 615
R C +G NN P S + ST E A K+ ARS A ASPP
Sbjct: 96 RVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALASPP 140
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 404 KSNCDELHKADRQLRQKIAILC--LMEMAFNKSSSQRKL--SFEEIAREARIPLDEV 246
KS CDEL + + L +K A C + E N S+ +R F+E+ A L EV
Sbjct: 61 KSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALSEV 117
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 145 WPGRAPC*RQRGWTRGE--RRSPRPPTCW 65
WP RAP R+ G R R +PRPP+ W
Sbjct: 16 WPARAP--RRGGLLRARAVRAAPRPPSKW 42
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 577 ISARSVAGRASPPSAHPTYRSAAR 648
++A SV+GR PS+ +YR+AAR
Sbjct: 19 LAAASVSGRGRSPSSASSYRAAAR 42
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 157 RTHCTVAHDRT*SICPLINFSAKAFMMRSSTSSRGILASRAISSNDSFL*DEDLLKAISI 336
RT CT +R CP I+ A++F + S +L S+ D D+D LK S+
Sbjct: 634 RTSCT---ERVALRCPAIDSVARSFSWEDTNSGSPLLGGLKHSNVDDADYDDDELKCYSL 690
Query: 337 KHRI 348
I
Sbjct: 691 VQEI 694
>04_04_0188 - 23433753-23436572
Length = 939
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 559 RASLKAISARSVAGRASPPSAH 624
R +L+ ++ARS GRA PP+ H
Sbjct: 36 REALRQLAARSARGRAPPPTDH 57
>01_02_0129 +
11410345-11410487,11410908-11411014,11414512-11414786,
11415014-11415179,11415681-11415922,11417046-11417141,
11417574-11417761,11418573-11418789
Length = 477
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 614 RRRTQRTEALRGSNGQWDHGLCNIPRLTYKIVRELESHHQHLRVYFLNVQ 763
+R+T+RT RG + +C+I T + ++ + L Y LN++
Sbjct: 328 KRKTERTVGGRGGEAEVKDIMCHIYTTTKESLKSISPPEMKLLKYLLNIE 377
>04_04_1621 + 34842062-34842066,34842270-34842921
Length = 218
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 460 SQAHSLGVPLRECRIG*ANNSPKSYTSGASTPERASLKAISARSVAGRASPPSAHPTYRS 639
S A +LG P R CR A + GA+ +R A S AG+ + P +R+
Sbjct: 4 SAAENLGNPQRPCRSRAAMRDGERAEVGAAGVKRKEASASSDSEPAGKKAKKKILPKWRA 63
Query: 640 AA 645
A
Sbjct: 64 NA 65
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 656 GQWDHGLCNIPRLTYKIVRELESHHQHL 739
G W HG+C + Y I+RE + Q L
Sbjct: 429 GDWGHGICILVSTLYLIIREKKFASQKL 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,663,116
Number of Sequences: 37544
Number of extensions: 493508
Number of successful extensions: 1614
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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