Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c18
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical pr... 155 3e-38
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 33 0.18
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 29 5.0
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 29 5.0
AL032623-14|CAA21518.1| 593|Caenorhabditis elegans Hypothetical... 29 5.0
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 5.0
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z49130-6|CAA88971.1| 387|Caenorhabditis elegans Hypothetical
protein T06D8.8 protein.
Length = 387
Score = 155 bits (377), Expect = 3e-38
Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 5/236 (2%)
Frame = -1
Query: 755 LESTLEDAD---GVTPVHGRFYKLASEYYRVRGPTGRYYRAALRYVGCADGGEALPATER 585
++ST + D GVT VH FY+++S Y R G YYR ALRY+G D TE+
Sbjct: 144 IDSTQHEVDSLVGVTEVHAPFYRVSSLYLREVGDFAGYYREALRYLGVEDANNL--TTEQ 201
Query: 584 ADI-AFRLALSGVLAPDVYDLGELLAHPILHSLRGTPNEWACELVKAVSVGDVGAFERIR 408
+ A L + +L +V++ GELLAHPIL SL GT W +++ A + GD+ F +
Sbjct: 202 KQVHAVLLGFAALLGENVHNFGELLAHPILKSLEGTRERWIVDVLLAFNSGDLTRFFSLE 261
Query: 407 AK-SNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEVELLIM 231
D+L K L KI ++ +ME+A ++ + R +SF+EIA + +IP DEVE L+M
Sbjct: 262 GDWGGWDDLKKQKDFLTAKIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVM 321
Query: 230 KALAEKLIRGHIDQVRSCATVQWVRPXXXXXXXXXXXXXXVDAWREAVSAAADLLA 63
KAL++ LIRG I+QV V WV+P + AWR V++ +++
Sbjct: 322 KALSKDLIRGDINQVEQVVYVTWVQPRVLDNPQIMQMATRISAWRNDVNSMEGIVS 377
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -1
Query: 338 LMEMAFNKSSSQRKLSFEEIAREARIPLDEVELL--IMKALAEKLIRGHI 195
L+++ + +RK ++ A+EA +P DE E L MK L E+++ I
Sbjct: 809 LVDLTVEEEEKERKAKAQQAAKEASVPTDEAEQLNTEMKQLCERVLEAQI 858
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/51 (25%), Positives = 32/51 (62%)
Frame = -1
Query: 332 EMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQVRS 180
++A +K + L +E++++ +I D ++ + L+EK++ GH+DQ ++
Sbjct: 28 KVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPL--TLSEKILYGHLDQPKT 76
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein
2, isoform a protein.
Length = 777
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/51 (25%), Positives = 32/51 (62%)
Frame = -1
Query: 332 EMAFNKSSSQRKLSFEEIAREARIPLDEVELLIMKALAEKLIRGHIDQVRS 180
++A +K + L +E++++ +I D ++ + L+EK++ GH+DQ ++
Sbjct: 28 KVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPL--TLSEKILYGHLDQPKT 76
>AL032623-14|CAA21518.1| 593|Caenorhabditis elegans Hypothetical
protein Y43F8B.14 protein.
Length = 593
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 432 RWCLREDPGQIQLRRITQSRQATETENCDSVLNGDGLQ*ILISEEAVVR 286
RWCL E+ Q++L R ET + + L L L+S+E R
Sbjct: 170 RWCLTENHKQLRLAEFFDRRYKRETSDAEKFLEQANL--FLLSDETKSR 216
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 425 AFERIRAKSNCDELHKADRQLRQKIAILCLMEMAFNKSSSQRKLSFEEIAREARIPLDEV 246
A ER+ K N + + +LR +I L M K + ++ F+E +RE R +DE+
Sbjct: 340 AMERVEEKWNAECV-----KLRDEIGGLQKMLFQSTKETMDKREIFDEESRECRRKIDEL 394
Query: 245 E--LLIMKALAEKLI 207
E L +A A++ I
Sbjct: 395 EGLLATQQAAAQRQI 409
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 432 RWCLREDPGQIQLRRITQSRQATETEN 352
RWCL E+P Q +L R ++ E+ N
Sbjct: 380 RWCLTENPTQQKLARFMNRKEYGESHN 406
>Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical
protein C25F9.4 protein.
Length = 592
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 432 RWCLREDPGQIQLRRITQSRQATETEN 352
RWCL E+P Q +L R ++ E+ N
Sbjct: 379 RWCLTENPTQQKLARFMNRKEYGESHN 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,003
Number of Sequences: 27780
Number of extensions: 371308
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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