Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c17
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.075
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 29 0.40
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 29 0.70
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 27 1.6
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.8
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 3.7
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 3.7
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 3.7
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.9
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 6.5
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 8.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.6
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 25 8.6
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.9 bits (69), Expect = 0.075
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = -2
Query: 366 DKIVYALNTSIPTESFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKA 187
D++ L T + E+ KAK D+T+ +L Q++ +E +++ K E K++ A
Sbjct: 623 DELQKRLQT-LEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLRKE-----NEENKQVIA 676
Query: 186 VKEE---KPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEK 73
+KE K ND ++L N + E +L Q + +E V K
Sbjct: 677 LKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSK 717
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 29.5 bits (63), Expect = 0.40
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 225 ILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTK-LFTEK 49
IL+ +S+KK + K ++ N + L+N++ KKL LS + V EK + L TE
Sbjct: 63 ILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETEN 122
Query: 48 CR 43
+
Sbjct: 123 TK 124
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.70
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 255 SERENVIKNCI-LATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQ 79
S+R + I + E K VK++ N E L +L +E + + +E +EE +Q
Sbjct: 4 SQRSQIKNEDISFVSQEDDSSKKFVKDDSENSEEELEDLNSEDEFYQSNSSEDEIEEEVQ 63
Query: 78 EKT 70
E T
Sbjct: 64 EST 66
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = -2
Query: 402 FQDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLY-SQIRTGHSERENVIKNC 226
F D+ + + D+K+ L+ + PTE F + I A L+ QI E ++ N
Sbjct: 18 FHDLQVESQRTDEKLERLLSDAQPTEKFNSLIKNMAERLVLFVGQI----EELKDAFCNT 73
Query: 225 ILATAESVKKLKAVKEEKPNDLEVL 151
+ + E ++++K+V E+ E L
Sbjct: 74 TIVSEEVIERIKSVDREQNRIKECL 98
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 228 CILATAESVKK-LKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEK-TTKLFT 55
C L + S+ + + E +P L+ L E +LRLL+ + EV++EK T+ L
Sbjct: 78 CELIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLEL---IREVVEEKDTSDLAV 134
Query: 54 EKC 46
E+C
Sbjct: 135 ERC 137
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 222 LATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKLFTEKCR 43
+ + E + + K VKEEK + L KAE+ +L L + + VEE ++ KL + R
Sbjct: 7 IPSLEQLVQQKRVKEEKAARPKFLS--KAERARLALERRQKEVEEAKAKQNDKLLDLRKR 64
Query: 42 S 40
+
Sbjct: 65 T 65
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = -2
Query: 366 DKIVYALNTSIPTESFKAKIDATAACHDLYSQIRTGHSE-RENVIKNCILATAESVKKLK 190
D+IV + T+ + K ++ T H+L S ++ S+ ++V+K + A ++ L
Sbjct: 476 DEIVEKILTNYGKHNAK-NMNFTQLLHELNSTLQLEISKLSKSVVKPSLFALQAKLELLS 534
Query: 189 AVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKL 61
A E + + L + QK+L +LQ + + + ++L
Sbjct: 535 AENEYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRL 577
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 238 YIFPFRMPCSYLRVK-IMTSCSSIN 309
Y+ PF++ C Y K +MTS + +N
Sbjct: 173 YLMPFQLACKYSNFKSLMTSYNKVN 197
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -2
Query: 324 SFKAKIDATAACHDLYSQIRTGHSERENVIKNCILATAESVKKLKAVKEEKPNDLEVLRN 145
+ K K+ A D H +ENV+ I + ++ EE N + VLRN
Sbjct: 39 AIKTKVKDINALKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRN 98
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +3
Query: 237 LH-FPFQNALFVSESKDH 287
LH FPF N +F S S DH
Sbjct: 109 LHWFPFDNGIFTSSSFDH 126
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 244 KCNKKLYTGNCRISKKAKSSQRRK 173
K N LY+ NC+ SKK S ++ K
Sbjct: 1342 KSNLLLYSCNCKFSKKKPSDEQIK 1365
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 8.6
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = -2
Query: 396 DILKKMRILDDKIVYALNTSIPTESFKAKI----DATAACHDLYSQIRTGHSERENVIKN 229
D K + LD+K+ N + +I D ++Y++ + IK
Sbjct: 71 DSKDKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKK 130
Query: 228 CILATAESVKKLKAVKEEKPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTK 64
+ + E+V KLK EE N ++LRN+ E + R EL ++ +Q+++ K
Sbjct: 131 RLEKSDETVCKLK---EENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVK 182
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 174 KPNDLEVLRNLKAEQKKLRLLQTELSVEEVIQEKTTKLFTE 52
K ND+E +N+K +++R L+ L E +Q + L TE
Sbjct: 234 KVNDVEQSQNVKVFTERIRFLENAL---EKVQREKDSLSTE 271
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 228 CILATAESVKKLKAVKEEKPNDLEVLRNL 142
C+L E++ LK + +PN E L N+
Sbjct: 208 CLLRPEEALSSLKTALDSQPNYEEALSNM 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,329
Number of Sequences: 5004
Number of extensions: 31848
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -