Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c17
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    29   0.035
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     29   0.035
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 399 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 274
           +++LK+ +I+ ++I   L+ SI  +S   ++D +  C DL S
Sbjct: 437 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 478


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 399 QDILKKMRILDDKIVYALNTSIPTESFKAKIDATAACHDLYS 274
           +++LK+ +I+ ++I   L+ SI  +S   ++D +  C DL S
Sbjct: 143 EEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLAS 184


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 473 NVNSNMYFDSVNQYLFPNNF 532
           ++NS  Y D V + +FP +F
Sbjct: 461 HINSVSYIDKVARIVFPASF 480


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 LTYLRHILFYHQVSSSSSGCPEILKNP 416
           LT +  I+F   +  + + C  I+KNP
Sbjct: 43  LTIIYMIIFVTGIFGNITTCTVIIKNP 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,591
Number of Sequences: 438
Number of extensions: 2274
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)