Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c09
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IP13 Cluster: CG31782-PB, isoform B; n=4; Drosophila ...    34   4.4  
UniRef50_A7KQ32 Cluster: UL36; n=7; root|Rep: UL36 - Meleagrid h...    33   5.8  

>UniRef50_Q8IP13 Cluster: CG31782-PB, isoform B; n=4; Drosophila
           melanogaster|Rep: CG31782-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 826

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 223 CYTSSRK*ITHNRTFFVILNNFTSHKNLH*SRKHRSCQ*CSQT-SRHSDIKL 375
           C  S R+  +H    F   +N + HK LH  +K   C+ CS+T  R SD+K+
Sbjct: 197 CSKSYRQIGSHCDKSFKYPSNLSRHKRLHNGKKPMECEFCSKTFPRASDLKV 248


>UniRef50_A7KQ32 Cluster: UL36; n=7; root|Rep: UL36 - Meleagrid
            herpesvirus 1 (MeHV-1) (Turkey herpesvirus)
          Length = 3357

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 21/66 (31%), Positives = 36/66 (54%)
 Frame = -1

Query: 678  ILSQQTILCILINSDP*FKSLTPRSVLTVCSHGILNASWPIFVNILILIGDLFSTSLTLI 499
            I S +TIL  LI S+   +SL PR V++     ++ ++   F N +  +G++ +T  T  
Sbjct: 1289 IQSVRTILDNLITSNHKIRSLNPREVISENDTSVVASAKVEFSNAIQTVGNVTATLSTFE 1348

Query: 498  SIWYTS 481
             + YTS
Sbjct: 1349 GLTYTS 1354


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,380,826
Number of Sequences: 1657284
Number of extensions: 11687470
Number of successful extensions: 21257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21255
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)