Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c09
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.4  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 454 KRITIKINNMDMVVKRNVRVSYIFLPI 374
           K +T +IN+ D++ KRN    ++  PI
Sbjct: 3   KHLTQRINSCDLLKKRNENDPFLKRPI 29


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 149  QSPIILRYKFIKIKHLHFLSLV 214
            Q PIIL  + + IK LH L ++
Sbjct: 1238 QQPIILPSQLLNIKTLHGLKVI 1259


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 390 YETLTFLLTTMSILFIFIVIRF 455
           Y   TF++ T+SIL   I+I +
Sbjct: 299 YLLFTFIMNTVSILVTVIIINW 320


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 587 EHTVSTERGVNDLN*GSLLIKIQSIVC*LKI*YKLSYFGIRND 715
           E T+     +  LN  + LIK Q+I C +K+ ++ +Y  ++ D
Sbjct: 222 EGTLRKSPSLTSLN--AYLIKNQTITCPIKVSWRGNYSCLKVD 262


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 587 EHTVSTERGVNDLN*GSLLIKIQSIVC*LKI*YKLSYFGIRND 715
           E T+     +  LN  + LIK Q+I C +K+ ++ +Y  ++ D
Sbjct: 273 EGTLRKSPSLTSLN--AYLIKNQTITCPIKVSWRGNYSCLKVD 313


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 587 EHTVSTERGVNDLN*GSLLIKIQSIVC*LKI*YKLSYFGIRND 715
           E T+     +  LN  + LIK Q+I C +K+ ++ +Y  ++ D
Sbjct: 222 EGTLRKSPSLTSLN--AYLIKNQTITCPIKVSWRGNYSCLKVD 262


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 454 KRITIKINNMDMVVKRN 404
           K +T +IN+ D++ KRN
Sbjct: 124 KHLTQRINSCDLLKKRN 140


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 408 LLTTMSILFIFIVIRFYTD 464
           ++TTMS+L   + + +Y D
Sbjct: 363 MITTMSLLLPGVAVNYYGD 381


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 408 LLTTMSILFIFIVIRFYTD 464
           ++TTMS+L   + + +Y D
Sbjct: 363 MITTMSLLLPGVAVNYYGD 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,781
Number of Sequences: 438
Number of extensions: 3843
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)