Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16c08
(758 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT... 358 7e-98
UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein precur... 98 2e-19
UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1; ... 89 1e-16
UniRef50_Q461S3 Cluster: F protein; n=2; Nucleopolyhedrovirus|Re... 42 0.022
UniRef50_Q20572 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4; ... 35 2.5
UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein precur... 34 4.4
UniRef50_Q8QLM5 Cluster: Putative uncharacterized protein; n=2; ... 33 7.7
UniRef50_Q8YNR8 Cluster: Alr4493 protein; n=3; Nostocaceae|Rep: ... 33 7.7
UniRef50_P41833 Cluster: N6-adenosine-methyltransferase IME4; n=... 33 7.7
>UniRef50_P41428 Cluster: Uncharacterized 79.9 kDa protein in EGT-IAP1
intergenic region precursor; n=5;
Nucleopolyhedrovirus|Rep: Uncharacterized 79.9 kDa
protein in EGT-IAP1 intergenic region precursor -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 690
Score = 358 bits (881), Expect = 7e-98
Identities = 176/225 (78%), Positives = 184/225 (81%)
Frame = -1
Query: 740 KKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFSTMEQTCSIGIT 561
KKAYVNTL+DYRKWLYIFPNT VSVHYYC DALV+V+TKV PGVGVMFSTM QTCSI IT
Sbjct: 433 KKAYVNTLIDYRKWLYIFPNTTVSVHYYCHDALVEVDTKVSPGVGVMFSTMAQTCSIRIT 492
Query: 560 HDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLLQL 381
+DVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ MLLEKATT SFI TVDNFTRPVLLQL
Sbjct: 493 YDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQ-MLLEKATT-SFIPTVDNFTRPVLLQL 550
Query: 380 FNKFHIEDYTSASQHSFHQSKIYTNSATPDEDSQDDSNXXXXXXXXXXXXTXXXXXXXXX 201
+KFHI+DYTS H FHQSKIYTNSA PDEDSQDDSN
Sbjct: 551 PHKFHIKDYTSTPHHFFHQSKIYTNSAAPDEDSQDDSN-TTVVIIAIVAAMILFCGLLLF 609
Query: 200 XXXCIKKRCHQSNNVTVQYKNNDEFVTICNNLENNRAYINLTNEY 66
CIKKRCHQSNNV VQYKNN+EFVTICNNLE+NRAYINL NEY
Sbjct: 610 LFCCIKKRCHQSNNVVVQYKNNNEFVTICNNLEDNRAYINLPNEY 654
>UniRef50_O10282 Cluster: Uncharacterized 73.1 kDa protein
precursor; n=6; Nucleopolyhedrovirus|Rep:
Uncharacterized 73.1 kDa protein precursor - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 657
Score = 97.9 bits (233), Expect = 2e-19
Identities = 53/144 (36%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = -1
Query: 719 LVDYRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFSTMEQTCSIGITHDVTI-T 543
LV+ RKW+Y F ++N +V Y+C A V GVGV+ + TCS+ + D + T
Sbjct: 424 LVNCRKWVYSF-SSNATVSYWC-GARDAATVAVPAGVGVVVAQSPLTCSVRVNKDALLFT 481
Query: 542 VDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLLQLFNKFHI 363
VD+R + + S YWP+++FN+N+Y++ ++LL+ TT SF TV + + L L ++FHI
Sbjct: 482 VDTRSHKAASRAYWPRRRFNYNDYVNTSLLLQ--TTTSFADTVTDLSAQQLKTLRSRFHI 539
Query: 362 EDYTSASQHSFHQSKIYTNSATPD 291
DY + +H+F + +++A PD
Sbjct: 540 RDY-ATPRHTFFAPR-RSDAAAPD 561
>UniRef50_Q91GN0 Cluster: Putative uncharacterized protein; n=1;
Epiphyas postvittana NPV|Rep: Putative uncharacterized
protein - Epiphyas postvittana nucleopolyhedrovirus
(EppoMNPV)
Length = 649
Score = 89.0 bits (211), Expect = 1e-16
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Frame = -1
Query: 740 KKAYVNTLVDYRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFSTMEQTCSIGIT 561
K+ ++TLV RKWLY F N+SV C + V V PGVG++ + CSI I
Sbjct: 411 KQVLMDTLVVGRKWLYSFAK-NMSVGCLCNHYPMDVVVSVPPGVGLITTQPSNFCSIRII 469
Query: 560 HDVTI-TVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLLQ 384
+ + + D++ Y + S TY P+K+F++NNY+D ++L + T+ F V + T L
Sbjct: 470 NTLILFNADTQLYATESITYEPRKQFDYNNYVDGSLLSQ--TSTPFADAVTDLTLTKLRL 527
Query: 383 LFNKFHIEDYTSASQHSF 330
L ++FHI DYT+ + F
Sbjct: 528 LRSRFHIRDYTAPPKTFF 545
>UniRef50_Q461S3 Cluster: F protein; n=2; Nucleopolyhedrovirus|Rep:
F protein - Trichoplusia ni SNPV
Length = 661
Score = 41.5 bits (93), Expect = 0.022
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = -1
Query: 719 LVDYRKWLYIFPNTNVSVHYYCK---DALVQVNTKVL-PGVGVMFSTMEQTCSIGITHDV 552
+ D+ +WLY+ N V V++ C D V NT VL PG+G++ +T + TC +
Sbjct: 424 ITDFNRWLYVLEN-EVDVNFDCLQKGDNSVSANTLVLSPGIGIINATGKHTCQLSTKRTF 482
Query: 551 TITVDS 534
T+++
Sbjct: 483 LTTIET 488
>UniRef50_Q20572 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 293
Score = 35.5 bits (78), Expect = 1.4
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 333 RMLRRRCVIFNVKFIKKLQ*NRTGKIVNSLYKTGG--GCFFKQHILVDVVVKIKF--LFR 500
RM RRC FN +F K N TG + N+L + G F+Q++L + ++KIK L +
Sbjct: 107 RMHMRRCRRFNYQFSKFA--NHTGALFNNLMHSNEQLGTLFQQYVLDEHIIKIKTGRLSK 164
Query: 501 PVCS*MADIKS 533
P + +I+S
Sbjct: 165 PATEEVPNIES 175
>UniRef50_Q8IHQ0 Cluster: Putative uncharacterized protein; n=4;
Eukaryota|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 3207
Score = 34.7 bits (76), Expect = 2.5
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Frame = -1
Query: 485 NFNNYIDQNMLLEKATT--ASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIY 312
N+ NY ++N + + T A+ +D+ N HI + S +Q +H SKI
Sbjct: 2190 NYYNYSNKNFYMNEKYTEGATNFMNIDDMKDA---GNENNMHILNNNSINQTYYH-SKIK 2245
Query: 311 TNSATPDEDSQDDSNXXXXXXXXXXXXTXXXXXXXXXXXXCIKKRCHQSNNVTVQYKNND 132
N+ D+D+ +++N K H N +Q + N
Sbjct: 2246 NNNNNDDDDNNNNNNNNNNDNNDNNNIMMHNNYQPFLYENQYNKHIHMMNQ-QIQKETNT 2304
Query: 131 EFVTI-CNN--LENNRAYINLTNE 69
F I CN +ENN+ IN++N+
Sbjct: 2305 SFKHITCNQKFIENNK--INISND 2326
>UniRef50_Q1FEN4 Cluster: Putative uncharacterized protein
precursor; n=1; Clostridium phytofermentans ISDg|Rep:
Putative uncharacterized protein precursor - Clostridium
phytofermentans ISDg
Length = 483
Score = 33.9 bits (74), Expect = 4.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -1
Query: 617 PGVGVMFSTMEQTCSIGITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKAT 438
P + V + ++ S+ D+ +DS FY+ S+T K FN N + +NM ++K T
Sbjct: 221 PAISVS-NLIQSNYSLEKLSDINYLIDS-FYIVDSSTTVTKSLFNVNELLKKNMAIKKRT 278
Query: 437 TA 432
A
Sbjct: 279 DA 280
>UniRef50_Q8QLM5 Cluster: Putative uncharacterized protein; n=2;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Mamestra configurata NPV-A
Length = 680
Score = 33.1 bits (72), Expect = 7.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = -1
Query: 719 LVDYRKWLYIFPN-TNVSVHYYCKDALVQVNT----KVLPGVGVMFSTMEQTCSI 570
+ DY WLY+ + TNV+V + D + + KV GVGV+ + ++TC +
Sbjct: 435 IADYNNWLYVMQHDTNVNVQCHKSDGIPADHKFDPIKVSAGVGVIRAIGQETCKL 489
>UniRef50_Q8YNR8 Cluster: Alr4493 protein; n=3; Nostocaceae|Rep:
Alr4493 protein - Anabaena sp. (strain PCC 7120)
Length = 295
Score = 33.1 bits (72), Expect = 7.7
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 519 ADIKSRIYSYGHIMRYSNRTRLLHSRKHNTNAGQNFCINLYKRVFTIIVDGHVRVWKNV 695
AD+ R+ + G+ + Y+ + L+H R H+ N + Y+R H VW+ +
Sbjct: 204 ADLCRRVQNQGYKILYTPQVSLIHIRGHSMKKNANATVVEYRRSQLYYYKKHCPVWERI 262
>UniRef50_P41833 Cluster: N6-adenosine-methyltransferase IME4; n=4;
Saccharomycetaceae|Rep: N6-adenosine-methyltransferase
IME4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 600
Score = 33.1 bits (72), Expect = 7.7
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -1
Query: 467 DQNMLLEKATTASFIQTVDNFTRPVLLQLFNKFHIEDYTSASQHSFHQSKIYTNSATPDE 288
DQN+L+ A I +D F+ +L +NKFH YT S S + K+ + + P+
Sbjct: 76 DQNLLV--ADRPEKIVYLDVFSLKIL---YNKFHAFYYTLKSSSSSCEEKVSSLTTKPEA 130
Query: 287 DSQDD 273
DS+ D
Sbjct: 131 DSEKD 135
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,027,973
Number of Sequences: 1657284
Number of extensions: 13422932
Number of successful extensions: 39807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39761
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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