Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c08
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical pr...    36   0.041
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z69661-3|CAA93490.1|  293|Caenorhabditis elegans Hypothetical
           protein F48F7.5 protein.
          Length = 293

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +3

Query: 333 RMLRRRCVIFNVKFIKKLQ*NRTGKIVNSLYKTGG--GCFFKQHILVDVVVKIKF--LFR 500
           RM  RRC  FN +F K    N TG + N+L  +    G  F+Q++L + ++KIK   L +
Sbjct: 107 RMHMRRCRRFNYQFSKFA--NHTGALFNNLMHSNEQLGTLFQQYVLDEHIIKIKTGRLSK 164

Query: 501 PVCS*MADIKS 533
           P    + +I+S
Sbjct: 165 PATEEVPNIES 175


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 710 YRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFSTMEQT 579
           Y+KW Y+F    +S      D     N   L G  + F+ +E+T
Sbjct: 322 YKKWCYMFGKVKISPKKGISDTNTTTNLTGLDGKKLTFTVIEET 365


>U00063-2|AAK18961.1|  329|Caenorhabditis elegans Hypothetical
           protein F56C9.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = -1

Query: 566 ITHDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTASFIQTVDNFTRPVLL 387
           +T + + + DS F  SH TT   ++  N N+    N  +E         T  +  R    
Sbjct: 145 LTSEHSSSGDSYFNNSHKTTPNYRRFANSNDSSRDNSQMEYKAENDASHTSQSSNRFGFN 204

Query: 386 QLFNKFHIEDYTSASQHSFHQSKIYTNSATPD 291
              N+  I  +  A++H+F+ +  Y    TPD
Sbjct: 205 SQINRTDI--HPPAARHTFNPAAAYNGKITPD 234


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +3

Query: 456 HILVDVVVKIKFLFRPVCS*MADIKSRIYSYGHIMRYSNRTRLLHSRKHNTNAGQNFCIN 635
           HI    V+   F+ R V + +A +   +YSYG+   Y+N   + H     T+ GQ    +
Sbjct: 298 HIYHPYVILGSFVVRLVMTTLAPMA--MYSYGYNKLYANVLNVQHRNAARTSQGQAEYGD 355

Query: 636 LYKRVFTIIVDGH 674
             +R +T  VDG+
Sbjct: 356 YRRRSYT-RVDGN 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,140
Number of Sequences: 27780
Number of extensions: 347274
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)