Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c01
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1VTQ8 Cluster: ABC transporter, permease protein; n=1;...    34   3.7  
UniRef50_Q22SL9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A5K559 Cluster: Putative uncharacterized protein; n=4; ...    33   6.5  

>UniRef50_Q1VTQ8 Cluster: ABC transporter, permease protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: ABC transporter,
           permease protein - Psychroflexus torquis ATCC 700755
          Length = 260

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 317 FFFSIKGATVGRLHILLIYYLFSHSYGLIITSTYWSRKVYSYASNNITL 463
           F+F   G +   L +++  +L    +G+II ST+W+ ++ S  + + TL
Sbjct: 114 FYFLKTGLSGSLLGVIIAQFLICFPFGIIICSTFWTSQIQSLENLSFTL 162


>UniRef50_Q22SL9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1018

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +2

Query: 224 KAKRIF-IS*DYQYLIRENISRRKVSNYKVKIFFFSIKGATVGRLHILLIYYLFSHSYGL 400
           +AK++  IS D++ L+R  ISR + + YK  IFF S       ++ I  + +LF ++  +
Sbjct: 553 RAKKVLEISEDFRKLLRYEISRPQTAIYKSYIFFLS---DIDPKVFIEGVVFLFQNALTI 609

Query: 401 IITSTY-WSRKVYSY 442
            +T+ Y   ++ YSY
Sbjct: 610 SLTNNYDVKKRKYSY 624


>UniRef50_A5K559 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 385

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 66  CECED--EKNTRDYNFCNCIIVRRCM 137
           C C D  EK T+ YNF +C+++++C+
Sbjct: 13  CTCLDLFEKYTKSYNFSDCVVIKKCI 38


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,344,763
Number of Sequences: 1657284
Number of extensions: 12578045
Number of successful extensions: 24304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24296
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)