Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c01
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       26   0.31 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   1.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.7  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   2.2  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 99  YNFCNCIIVRRCMSRSCFCLAYASVAYLSLPVNYKNVTLVH 221
           YNF N ++V R  + +  CLA      + L V+Y +  L H
Sbjct: 103 YNFTNNVLVHRSQNSNDVCLAIPESLVIKL-VDYHHQLLGH 142


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 322 KKYFHFIIRYLPSAYVF 272
           KK FH+I  Y+P   VF
Sbjct: 184 KKQFHYIFTYMPYNIVF 200


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 606 LEQINNFILTVITCLNYVTKKKSKYHNRSRSIF 508
           +E I   +   + C++  TK++SK H   RS+F
Sbjct: 466 IEFIRKVLEFDVKCVSNYTKQQSKIHLIVRSVF 498


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 RRKVSNYKVKIFFFSIKGATVGRLHILLIYYLFSHS 391
           +R     +++++   I+GA +G L  L+  +LFS++
Sbjct: 103 QRSDEEAQIQLWIKQIRGAELGGLGTLIAPFLFSNT 138


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 588 SYLFVLTHMKH*IGIICKFI*VTLVSL 668
           SY++  TH+     I C FI + +V++
Sbjct: 66  SYMYAFTHIFFFFAICCDFIALIVVNI 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,651
Number of Sequences: 336
Number of extensions: 3726
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)