Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c01
         (817 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    27   0.69 
AY928182-1|AAX22219.1|  335|Anopheles gambiae phenoloxidase inhi...    26   1.6  
AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    25   2.1  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   8.5  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   8.5  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 GKNKIATCNGVR*YNCRNCSLVCFFHPRIH 67
           GK   + C  ++  NCR C++  F HPR H
Sbjct: 38  GKTTCSQC--IQTTNCRWCTMPNFTHPRCH 65


>AY928182-1|AAX22219.1|  335|Anopheles gambiae phenoloxidase
           inhibitor protein protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 57  LRHCECEDEKNTRDYNFCNCIIVRRCMSRSCFCLAYASV 173
           L  CE + +K     N   C+  R C S SC   +Y  V
Sbjct: 16  LYFCEAQTDKKQCAKNNEYCLTHRDCCSGSCLSFSYKCV 54



 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 114 CIIVRRCMSRSCFCLAYASVAYLSLPV 194
           C+    C S+SC   AY  V    L V
Sbjct: 174 CLTSSECCSKSCLSFAYKCVNRYDLSV 200


>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 122 DDTIAEIVVSCVFFILA 72
           D T+A I+V CV F++A
Sbjct: 74  DSTVAVIIVYCVLFVIA 90


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 VSSYAVACRDLVFASPTRLSHTSVY 189
           +   A A R  VFAS   LS+ SVY
Sbjct: 337 IRKVAQAQRQCVFASEANLSYYSVY 361


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 115 VSSYAVACRDLVFASPTRLSHTSVY 189
           +   A A R  VFAS   LS+ SVY
Sbjct: 337 IRKVAQAQRQCVFASEANLSYYSVY 361


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,701
Number of Sequences: 2352
Number of extensions: 14831
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)