Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16c01
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical...    29   4.0  
AF003384-10|AAB54241.3|  351|Caenorhabditis elegans Hypothetical...    29   4.0  
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical
           protein K07B1.7b protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 149 FLPRLRVCRIPQSTRKL*KCNFGTLKAKRIFIS*DYQYLIRENISRRKV 295
           FL ++R+CR+P  T  + K    T K K+ F   D+QY   ++    K+
Sbjct: 174 FLEQIRLCRLP--TTVISKLGIQTQKRKKKFGEVDFQYEKTDSCKAEKI 220


>AF003384-10|AAB54241.3|  351|Caenorhabditis elegans Hypothetical
           protein K07B1.7a protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 149 FLPRLRVCRIPQSTRKL*KCNFGTLKAKRIFIS*DYQYLIRENISRRKV 295
           FL ++R+CR+P  T  + K    T K K+ F   D+QY   ++    K+
Sbjct: 22  FLEQIRLCRLP--TTVISKLGIQTQKRKKKFGEVDFQYEKTDSCKAEKI 68


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 284 RRKVSNYKVKIFFFSIKGATVGRLHILLIYYLFSHSYGLIITST 415
           R+ +  YK  I  FSI G     L  +L   L SH+ G +  +T
Sbjct: 35  RKDLGAYKHLILLFSILGIAFASLEFVLYPVLHSHNAGYVFFTT 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,183
Number of Sequences: 27780
Number of extensions: 323402
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)