Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b24
(586 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41481 Cluster: P18 protein; n=12; Nucleopolyhedrovirus... 316 2e-85
UniRef50_Q0N420 Cluster: Ac93-like protein; n=3; Nucleopolyhedro... 146 3e-34
UniRef50_Q0IL20 Cluster: ORF99; n=14; Nucleopolyhedrovirus|Rep: ... 127 2e-28
UniRef50_Q6QXM2 Cluster: ORF82; n=2; Granulovirus|Rep: ORF82 - A... 87 4e-16
UniRef50_Q06372 Cluster: 33 kDa early protein; n=12; Nucleopolyh... 87 4e-16
UniRef50_Q91EW3 Cluster: ORF92 similar to AcMNPV ORF93; n=3; Gra... 79 1e-13
UniRef50_Q9PYU3 Cluster: ORF100; n=1; Xestia c-nigrum granulovir... 70 5e-11
UniRef50_Q8JRX5 Cluster: Putative uncharacterized protein PhopGV... 68 1e-10
UniRef50_Q8B4M7 Cluster: ORF92-like protein; n=1; Choristoneura ... 68 2e-10
UniRef50_A5IZT4 Cluster: Putative uncharacterized protein orf82;... 68 2e-10
UniRef50_Q7T9T7 Cluster: ORF_78; n=1; Adoxophyes orana granulovi... 64 2e-09
UniRef50_Q99GW8 Cluster: ORF83; n=12; Nucleopolyhedrovirus|Rep: ... 62 7e-09
UniRef50_Q0N421 Cluster: Ac92-like protein; n=7; Nucleopolyhedro... 56 5e-07
UniRef50_Q9PYU2 Cluster: ORF101; n=7; Granulovirus|Rep: ORF101 -... 40 0.043
UniRef50_Q7T9T6 Cluster: ORF_79; n=3; Granulovirus|Rep: ORF_79 -... 36 0.53
UniRef50_A7IS97 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q236S5 Cluster: TRNAHis guanylyltransferase family prot... 34 2.8
UniRef50_Q234S7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_A2DBR6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.8
UniRef50_O71120 Cluster: ORF503; n=1; Trichoplusia ni granulovir... 33 3.8
UniRef50_A7JUK1 Cluster: Possible methyltransferase; n=3; Pasteu... 33 3.8
UniRef50_Q4Z2N1 Cluster: Putative uncharacterized protein; n=5; ... 33 5.0
UniRef50_A4HMW3 Cluster: Putative uncharacterized protein; n=3; ... 33 5.0
UniRef50_A0D035 Cluster: Chromosome undetermined scaffold_33, wh... 33 5.0
UniRef50_Q0U9T2 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 5.0
UniRef50_Q54FE3 Cluster: Structural maintenance of chromosome pr... 33 6.6
UniRef50_A0EIS7 Cluster: Chromosome undetermined scaffold_99, wh... 33 6.6
UniRef50_A4F1J4 Cluster: Putative uncharacterized protein; n=1; ... 32 8.7
UniRef50_A0BC37 Cluster: Chromosome undetermined scaffold_1, who... 32 8.7
>UniRef50_P41481 Cluster: P18 protein; n=12;
Nucleopolyhedrovirus|Rep: P18 protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 161
Score = 316 bits (777), Expect = 2e-85
Identities = 149/151 (98%), Positives = 150/151 (99%)
Frame = -1
Query: 454 MATSKTIVLYLCQAPATASLYVSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQ 275
MATSKTIVLYLCQAPATASLYVSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQ
Sbjct: 1 MATSKTIVLYLCQAPATASLYVSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQ 60
Query: 274 ALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIF 95
ALFMKKVYKHLVLKNEG FNKHHVLFDAMIMYKTYV+LVDESAFGSNVINYCEQFITAIF
Sbjct: 61 ALFMKKVYKHLVLKNEGAFNKHHVLFDAMIMYKTYVHLVDESAFGSNVINYCEQFITAIF 120
Query: 94 EIFTLSSKIVVAVPVNWENDNLSVLLKHLHN 2
EIFTLSSKIVVAVPVNWENDNLSVLLKHLHN
Sbjct: 121 EIFTLSSKIVVAVPVNWENDNLSVLLKHLHN 151
>UniRef50_Q0N420 Cluster: Ac93-like protein; n=3;
Nucleopolyhedrovirus|Rep: Ac93-like protein - Clanis
bilineata nucleopolyhedrosis virus
Length = 171
Score = 146 bits (355), Expect = 3e-34
Identities = 71/152 (46%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Frame = -1
Query: 457 IMATSKTIVLYLCQAPATASLYVSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQE 278
I TI LYLC P + D D+ ++YFE+I EC D+ CDKF++FA LK+E
Sbjct: 15 IQPQQHTIYLYLCDMPVG----LQNDKLDDDNVLYFESIIECFDDESCDKFSFFAALKKE 70
Query: 277 QALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAI 98
++L MKK L+ +G + K+HVL DA++MYKTYV LVDESAFG++++ C ++T I
Sbjct: 71 ESLLMKKTVYDLIEHADGNYCKNHVLIDALLMYKTYVELVDESAFGNDILESCVDYVTNI 130
Query: 97 FEIFTLSSKIVVAVP--VNWENDNLSVLLKHL 8
F +F L S+I+V +P N DNLS +LKHL
Sbjct: 131 FRLFRLQSRIIVVLPPHANLAQDNLSEVLKHL 162
>UniRef50_Q0IL20 Cluster: ORF99; n=14; Nucleopolyhedrovirus|Rep:
ORF99 - Leucania separata nuclear polyhedrosis virus
(LsNPV)
Length = 168
Score = 127 bits (306), Expect = 2e-28
Identities = 61/123 (49%), Positives = 85/123 (69%), Gaps = 2/123 (1%)
Frame = -1
Query: 370 DEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDA 191
D +IYFE I E LT+ CDK + F E+K+E+AL MKK L + G F K+H L DA
Sbjct: 34 DCDVIYFEGIIESLTNSSCDKLSCFVEMKREEALLMKKACIDLKKHSSGNFFKYHALLDA 93
Query: 190 MIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVP--VNWENDNLSVLL 17
++MYKT V+L+D+SA+ +NV+ CE +T +F++FT S+IVV +P VN++ DNLS LL
Sbjct: 94 LLMYKTCVDLIDDSAWAANVLESCETLVTYMFKLFTDRSQIVVIIPPEVNYQEDNLSALL 153
Query: 16 KHL 8
HL
Sbjct: 154 NHL 156
>UniRef50_Q6QXM2 Cluster: ORF82; n=2; Granulovirus|Rep: ORF82 -
Agrotis segetum granulosis virus (AsGV) (Agrotis
segetumgranulovirus)
Length = 167
Score = 86.6 bits (205), Expect = 4e-16
Identities = 39/127 (30%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Frame = -1
Query: 382 DTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHV 203
D + +Y + I E + + CDK F ELK+EQ L +K++ H++ + G + ++HV
Sbjct: 17 DESDEREEMYIQGIVEAVENQSCDKLACFLELKKEQVLLLKRLSDHILNRTSGNYFRNHV 76
Query: 202 LFDAMIMYKTY-VNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE-NDNL 29
L D ++MYK Y +++AFG+ C + + ++E+F+ ++ IVV + + D +
Sbjct: 77 LLDVLVMYKKYNEEFGEDTAFGNECAQLCLEIVQLMYELFSCTTNIVVLIESEADPEDEI 136
Query: 28 SVLLKHL 8
++LL HL
Sbjct: 137 NLLLAHL 143
>UniRef50_Q06372 Cluster: 33 kDa early protein; n=12;
Nucleopolyhedrovirus|Rep: 33 kDa early protein - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 282
Score = 86.6 bits (205), Expect = 4e-16
Identities = 41/44 (93%), Positives = 43/44 (97%)
Frame = +3
Query: 453 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATY 584
MIPLTPLFSRYKDSYLLY+FRLIDLLRASKSAHLT+LLS QATY
Sbjct: 1 MIPLTPLFSRYKDSYLLYAFRLIDLLRASKSAHLTRLLSLQATY 44
>UniRef50_Q91EW3 Cluster: ORF92 similar to AcMNPV ORF93; n=3;
Granulovirus|Rep: ORF92 similar to AcMNPV ORF93 - Cydia
pomonella granulosis virus (CpGV) (Cydia
pomonellagranulovirus)
Length = 161
Score = 78.6 bits (185), Expect = 1e-13
Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Frame = -1
Query: 382 DTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHV 203
D D D+ + + + E L D+ K F ELK+EQ L ++K+ L+ EG + ++HV
Sbjct: 19 DDDIDKQNFFIQGVLEALNDNSKSKQACFLELKREQCLLLRKIKHDLLYSCEGNYCQNHV 78
Query: 202 LFDAMIMYKTYVNLVD--ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAV--PVNWEND 35
L DA+ +YK Y D +SAF +++ C + + FE+F+ ++ IVV V N++++
Sbjct: 79 LLDALHLYKLYKEEFDDTQSAFDIDLMQTCREIVYLTFELFSCAANIVVFVHASANYKDN 138
Query: 34 NLSVLLKHLHN 2
L+ LL L +
Sbjct: 139 VLAQLLVELQS 149
>UniRef50_Q9PYU3 Cluster: ORF100; n=1; Xestia c-nigrum
granulovirus|Rep: ORF100 - Xestia c-nigrum granulosis
virus (XnGV) (Xestia c-nigrumgranulovirus)
Length = 122
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Frame = -1
Query: 391 VSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNK 212
V+ D+ D+ + + I E L ++ DK+ F ELK+EQA K+ EG F +
Sbjct: 15 VTNDSVDDDIDLVLQGIVESLDNNHTDKYACFLELKREQAHIFHKLAHDFTHHLEGTFFR 74
Query: 211 HHVLFDAMIMYKTYV-NLVDESAFGSNVINYCEQFITAIFEIFTL 80
+HVL D + +Y++YV D SAFG + + C + +++++FT+
Sbjct: 75 NHVLLDVLKLYESYVKEFKDRSAFGQDCVAQCIDIVYSVYQVFTV 119
>UniRef50_Q8JRX5 Cluster: Putative uncharacterized protein
PhopGV084; n=1; Phthorimaea operculella
granulovirus|Rep: Putative uncharacterized protein
PhopGV084 - Phthorimaea operculella granulovirus
Length = 161
Score = 68.1 bits (159), Expect = 1e-10
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Frame = -1
Query: 391 VSADTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNK 212
V D ++ + + E L + K F ELK+EQ L + K+ + LV G F +
Sbjct: 15 VCDDLHNEKSPFLLQGVLEALHEPNKSKMACFLELKREQRLMLYKLRQDLVENCHGTFYR 74
Query: 211 HHVLFDAMIMYKTYVNLVDE--SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-E 41
HH+L D + MYK Y + D+ SAF V C + +FE+F ++ I V V + E
Sbjct: 75 HHILLDLLNMYKMYRDEFDDDTSAFDLGVCEICLDMVHTVFELFQCATDIFVFVESSANE 134
Query: 40 NDNLSVLLKHL 8
ND + LL L
Sbjct: 135 NDIIYELLNGL 145
>UniRef50_Q8B4M7 Cluster: ORF92-like protein; n=1; Choristoneura
fumiferana granulovirus|Rep: ORF92-like protein -
Choristoneura fumiferana granulovirus (CfGV)
Length = 140
Score = 67.7 bits (158), Expect = 2e-10
Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Frame = -1
Query: 322 DQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVD--ES 149
D KF E+K+EQ++ +K++ L+ N G + K+H+L D + ++ Y + D ES
Sbjct: 18 DSKSKFAILLEMKREQSVLLKRLKHDLLHHNNGNYYKNHILLDILSLFSVYCDEFDNIES 77
Query: 148 AFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKH 11
AF ++ C++ + +FE+F + I V + + +DN+ V+L H
Sbjct: 78 AFDIDLKVLCQEIVCTLFELFNCVTDITVYLKADLNDDNVIVILLH 123
>UniRef50_A5IZT4 Cluster: Putative uncharacterized protein orf82;
n=1; Spodoptera litura granulovirus|Rep: Putative
uncharacterized protein orf82 - Spodoptera litura
granulovirus
Length = 155
Score = 67.7 bits (158), Expect = 2e-10
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = -1
Query: 322 DQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYV-NLVDESA 146
D D F ELK+EQ+L M+K G F ++HVL D +++YK YV + SA
Sbjct: 38 DSKDNHACFVELKKEQSLIMRKQNHDFANHCTGHFFRNHVLLDVLVLYKKYVQEFGNTSA 97
Query: 145 FGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE-NDNLSVLLKHLHN 2
FG +N C + ++E+F+ + I V V + + +D+L +LL +L +
Sbjct: 98 FGKECVNACLDIVCCMYELFSFIADINVYVRADTDPDDDLFILLTYLQS 146
>UniRef50_Q7T9T7 Cluster: ORF_78; n=1; Adoxophyes orana
granulovirus|Rep: ORF_78 - Adoxophyes orana granulovirus
(AoGV)
Length = 164
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Frame = -1
Query: 382 DTDADEPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHV 203
D+D I I E + D K F ELKQEQ +K++ ++ + G F ++H+
Sbjct: 23 DSDCQSKAILVHGILESVNDSTKSKLACFFELKQEQLNMLKQLKNDMIERATGNFYRNHI 82
Query: 202 LFDAMIMYKTYVNLVD--ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNW-ENDN 32
L + Y Y D +S+F + ++ ++ ++ FE+F+ SK++V V + E+ N
Sbjct: 83 LLHMLNWYNDYCEEFDDFDSSFDNKIVEMTQELVSISFELFSCMSKVIVYVRYDADESHN 142
Query: 31 LSVLLKHLHN 2
+ LL+ + +
Sbjct: 143 IMGLLRKIES 152
>UniRef50_Q99GW8 Cluster: ORF83; n=12; Nucleopolyhedrovirus|Rep:
ORF83 - Helicoverpa zea SNPV
Length = 254
Score = 62.5 bits (145), Expect = 7e-09
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +3
Query: 453 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATY 584
MIPLTPLFSRY+DSY L++FR +DL+R+S S L +LS + TY
Sbjct: 1 MIPLTPLFSRYRDSYFLFTFRYMDLIRSSPSKELALILSKELTY 44
>UniRef50_Q0N421 Cluster: Ac92-like protein; n=7;
Nucleopolyhedrovirus|Rep: Ac92-like protein - Clanis
bilineata nucleopolyhedrosis virus
Length = 252
Score = 56.4 bits (130), Expect = 5e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +3
Query: 453 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATY 584
MIPLTPL + YKDS+ L++FR +D +R KS HL +L+++ TY
Sbjct: 1 MIPLTPLLAEYKDSFFLFTFRHLDRMRVLKSKHLASILATELTY 44
>UniRef50_Q9PYU2 Cluster: ORF101; n=7; Granulovirus|Rep: ORF101 -
Xestia c-nigrum granulosis virus (XnGV) (Xestia
c-nigrumgranulovirus)
Length = 251
Score = 39.9 bits (89), Expect = 0.043
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +3
Query: 453 MIPLTPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATY 584
M+ TPL RY +S+ L++FR++D++R + + L LL S+ +
Sbjct: 1 MLTYTPLVKRYINSFQLFNFRMLDMIRVAPAEKLKNLLYSEVRF 44
>UniRef50_Q7T9T6 Cluster: ORF_79; n=3; Granulovirus|Rep: ORF_79 -
Adoxophyes orana granulovirus (AoGV)
Length = 267
Score = 36.3 bits (80), Expect = 0.53
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 465 TPLFSRYKDSYLLYSFRLIDLLRASKSAHLTKLLSSQATY 584
T F +YK SY L+ +R +DL R + S +L ++S Q +
Sbjct: 22 TQTFIKYKQSYALFVYRFLDLTRMAPSENLKNVISKQVQF 61
>UniRef50_A7IS97 Cluster: Putative uncharacterized protein; n=1;
Neisseria meningitidis|Rep: Putative uncharacterized
protein - Neisseria meningitidis
Length = 263
Score = 34.7 bits (76), Expect = 1.6
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 238 LKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINY 122
+ NEG F K+ LF I+YKTY+ + ++ SNV NY
Sbjct: 51 MSNEGKFEKNK-LFGLSILYKTYLEIDPKTISESNVANY 88
>UniRef50_Q236S5 Cluster: TRNAHis guanylyltransferase family
protein; n=1; Tetrahymena thermophila SB210|Rep: TRNAHis
guanylyltransferase family protein - Tetrahymena
thermophila SB210
Length = 334
Score = 33.9 bits (74), Expect = 2.8
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = +2
Query: 35 IVFPIDGHGHNDFTAERKNFENGRDKLFAIVNNVAAERRLVDQIHICLIHNHCIEQYVVF 214
IV IDG G FTA NFE DK + N AAE + I L + E VF
Sbjct: 24 IVVRIDGKGFTKFTANH-NFEKPNDKRGLDLMNKAAESVMETFNEIMLAYGQSDEFSFVF 82
Query: 215 VKNALVFKHQ 244
K+A +++ +
Sbjct: 83 KKDAELYQRR 92
>UniRef50_Q234S7 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 945
Score = 33.9 bits (74), Expect = 2.8
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Frame = -1
Query: 445 SKTIVLYLCQAPATASLYVSADTDAD---EPIIYFENITECLTDDQCDKFTYFAELK-QE 278
S+ +LY S V AD + D E + +NI + + F ++ Q
Sbjct: 707 SQDFILYFSDLIQQQSFSVKADFNIDIQFEIGVLIQNIDSLYQNLKLQNFDISLKIYLQN 766
Query: 277 QALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVD-ESAFGSNVINYCEQFITA 101
+ L ++ V + +N N + LFD ++ + +D F SN++NY + F+T
Sbjct: 767 KILIIQDVNSNQNEQNYIHTNNEYDLFDLILQQIQDIKYIDLHYQFDSNLVNYNKPFLTK 826
Query: 100 IFEIF 86
EI+
Sbjct: 827 DLEIY 831
>UniRef50_A2DBR6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 854
Score = 33.9 bits (74), Expect = 2.8
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -1
Query: 244 LVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQF-ITAIFEIFTLSSKI 68
++LKN FN+ L A Y TY+N++ + F S +INY + + + I
Sbjct: 450 ILLKNN-YFNEAMQLSHAFRRYATYLNILIKRKFWSEIINYFHEVDKDTLVNSLREVADI 508
Query: 67 VVAVPVNWENDNLSVLLKH 11
+ +P ++ + + ++L+H
Sbjct: 509 LDILPASYRGELIDIILQH 527
>UniRef50_O71120 Cluster: ORF503; n=1; Trichoplusia ni
granulovirus|Rep: ORF503 - Trichoplusia ni granulosis
virus (TnGV) (Trichoplusia nigranulovirus)
Length = 68
Score = 33.5 bits (73), Expect = 3.8
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 157 DESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDN-LSVLLKHLHN 2
D SAFG + + C + +++++F +S IVV V + + +N + VLL+ L +
Sbjct: 4 DRSAFGQDCVAQCIDIVYSVYQVFNRTSDIVVNVKQDIDANNVVYVLLEGLRS 56
>UniRef50_A7JUK1 Cluster: Possible methyltransferase; n=3;
Pasteurellaceae|Rep: Possible methyltransferase -
Mannheimia haemolytica PHL213
Length = 235
Score = 33.5 bits (73), Expect = 3.8
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 47 IDGHGHNDFTAERKNF--ENGRDKLFAIVNNVAAERRLVDQIHICLIHNHCIEQYVVFVK 220
I + H ++ A+ K + ENG+ ++ +AA +LVDQ I +C+EQ+++F K
Sbjct: 133 ISHYSHLNWLAKAKPWLAENGK---ITLILPIAAAEKLVDQSE--QIGLYCVEQWLIFTK 187
Query: 221 NALVFKHQVFVYFFHK 268
+ + K + + +K
Sbjct: 188 SGKLAKRSIVSFSLNK 203
>UniRef50_Q4Z2N1 Cluster: Putative uncharacterized protein; n=5;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 1538
Score = 33.1 bits (72), Expect = 5.0
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 328 TDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDES 149
T+D C +K+ + K+ V K + V NK+ + +Y+ L +E+
Sbjct: 17 TNDICKGLWIEYTIKKAHIHSLSKINYSFVQKKKNVINKNIYNMTCVELYRYSCLLKNEN 76
Query: 148 AFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLS 26
+ N + + I++ T SKI++ + + EN NL+
Sbjct: 77 INNITIYNQINKRVEMIYKFLT-PSKIILLIKLYLENINLN 116
>UniRef50_A4HMW3 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania braziliensis
Length = 569
Score = 33.1 bits (72), Expect = 5.0
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 322 DQCDKF-TYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDE 152
D C F TY+A L E L ++ Y ++NEGV HV F+ ++ +++ L++E
Sbjct: 344 DLCSLFLTYYASLFGEIVLKGERRY----VRNEGVLESTHVFFERLLCTQSFTILIEE 397
>UniRef50_A0D035 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 376
Score = 33.1 bits (72), Expect = 5.0
Identities = 19/88 (21%), Positives = 40/88 (45%)
Frame = -1
Query: 292 ELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQ 113
+++Q L K KH + + +F K + AM+ T + + A + + E+
Sbjct: 136 QIQQSMLLLEKSENKHQFIYYKALFWKLYYYLSAMLQISTELYQANRDAM---IESQSEK 192
Query: 112 FITAIFEIFTLSSKIVVAVPVNWENDNL 29
+ + ++F + SK+V +P+ E L
Sbjct: 193 VLDIVQKVFNVGSKVVGVIPIGGEASQL 220
>UniRef50_Q0U9T2 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 538
Score = 33.1 bits (72), Expect = 5.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 424 LCQAPATASLYVSADTDADEPIIYFENITECLTDDQ 317
LCQAP SLY + D + E I Y++ I E +D+
Sbjct: 201 LCQAPGRMSLYKTFDGEQPECIPYYDKILEKFKEDE 236
>UniRef50_Q54FE3 Cluster: Structural maintenance of chromosome
protein; n=1; Dictyostelium discoideum AX4|Rep:
Structural maintenance of chromosome protein -
Dictyostelium discoideum AX4
Length = 1131
Score = 32.7 bits (71), Expect = 6.6
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = -1
Query: 337 ECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAM------IMYK 176
E L +DQ D ++ + L+Q Q LF +KV+ + ++ V N H F M +M
Sbjct: 472 EFLRNDQRDVYSAYEWLRQNQNLFKQKVFGPICME-INVQNPEHAAFLEMTLSFNLMMTF 530
Query: 175 TYVNLVDESAFGSNVIN 125
+ ++ D F SN+I+
Sbjct: 531 VFQSMEDRETFHSNIID 547
>UniRef50_A0EIS7 Cluster: Chromosome undetermined scaffold_99, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_99,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 272
Score = 32.7 bits (71), Expect = 6.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 367 EPIIYFENITECLTDDQCDKFTYFAELKQEQALFMKKVYKHLVLKNEGVFNKHHVLFD 194
E +I +E+ + + DD C+ F E ++ L+M + + +L V N H+ +FD
Sbjct: 4 EIVINYEH-NQQVVDDLCESFDELEEQNEKYHLYMNRGSRREMLDRYQVSNNHYAIFD 60
>UniRef50_A4F1J4 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. SK209-2-6|Rep: Putative uncharacterized
protein - Roseobacter sp. SK209-2-6
Length = 417
Score = 32.3 bits (70), Expect = 8.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 272 GLLLFEFSKISKLVALVVRKTFCNIFEINNRLVGVRVGANVQRRCGRRL--TQIQHDRFA 445
GL L + + ++ V + R T + E+ V + V + R + ++ + D F
Sbjct: 337 GLALSDLTSLNFDVNYLDRDTLNSTDELTEYGVSLSVSHQLTREWNLNVGVSRTERDEFG 396
Query: 446 SRHDTADAAFFSLQR 490
S T+DA FFSLQR
Sbjct: 397 SARATSDAVFFSLQR 411
>UniRef50_A0BC37 Cluster: Chromosome undetermined scaffold_1, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_1,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 273
Score = 32.3 bits (70), Expect = 8.7
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -1
Query: 157 DESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 8
+E+ F SN+ NY Q I I E TLS KI E D LL++L
Sbjct: 191 EETKFTSNIQNYGRQLIETIEEQVTLSDKINSNTANKKEGDKQPELLEYL 240
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,782,509
Number of Sequences: 1657284
Number of extensions: 10430598
Number of successful extensions: 31207
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31183
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -