Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b22
(468 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212; Eukar... 205 3e-52
UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6; Eukar... 160 1e-38
UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorc... 144 9e-34
UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2; ... 131 2e-32
UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24, puta... 124 1e-27
UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3; ... 122 5e-27
UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1; Ostreoc... 121 9e-27
UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6; Eukaryo... 121 9e-27
UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containin... 117 1e-25
UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4; Leishm... 112 3e-24
UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3; Trichom... 110 1e-23
UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132, w... 103 3e-21
UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillar... 100 2e-20
UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal pr... 78 8e-14
UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1; Encepha... 73 4e-12
UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4; Thermo... 68 1e-10
UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4; Pyroba... 65 6e-10
UniRef50_A3DMS7 Cluster: 30S ribosomal protein S24e; n=1; Staphy... 62 6e-09
UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1; Thermo... 58 7e-08
UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=... 55 9e-07
UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1; Methan... 54 2e-06
UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1; Caldiv... 53 3e-06
UniRef50_O29151 Cluster: 30S ribosomal protein S24e; n=1; Archae... 53 3e-06
UniRef50_Q9YCY0 Cluster: 30S ribosomal protein S24e; n=2; Desulf... 52 5e-06
UniRef50_Q74M50 Cluster: 30S ribosomal protein S24e; n=1; Nanoar... 50 2e-05
UniRef50_O26367 Cluster: 30S ribosomal protein S24e; n=3; Methan... 50 3e-05
UniRef50_Q975Q9 Cluster: 30S ribosomal protein S24e; n=3; Sulfol... 47 2e-04
UniRef50_Q8PZ95 Cluster: 30S ribosomal protein S24e; n=5; Euryar... 46 3e-04
UniRef50_Q6L0P8 Cluster: 30S ribosomal protein S24e; n=4; Thermo... 45 0.001
UniRef50_P19953 Cluster: 30S ribosomal protein S24e; n=6; Haloba... 44 0.002
UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1; ... 42 0.005
UniRef50_A7I4V3 Cluster: SSU ribosomal protein S24E; n=1; Candid... 40 0.021
UniRef50_P54032 Cluster: 30S ribosomal protein S24e; n=1; Methan... 40 0.021
UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.027
UniRef50_Q2FS46 Cluster: 30S ribosomal protein S24e; n=1; Methan... 38 0.083
UniRef50_A2SR72 Cluster: Ribosomal protein S24e; n=2; Methanomic... 38 0.083
UniRef50_Q7QAG9 Cluster: ENSANGP00000021262; n=1; Anopheles gamb... 34 1.8
UniRef50_Q5KM71 Cluster: Expressed protein; n=2; Filobasidiella ... 34 1.8
UniRef50_Q08FF6 Cluster: Putative uncharacterized protein; n=2; ... 33 3.1
UniRef50_Q11SA1 Cluster: Chaperone with DnaJ domain; heat shock ... 33 3.1
UniRef50_Q9VT48 Cluster: CG8177-PA, isoform A; n=13; Diptera|Rep... 33 3.1
UniRef50_A4M8H6 Cluster: DNA-directed RNA polymerase, beta subun... 33 4.1
UniRef50_Q14QN3 Cluster: Hypothetical abc transporter permease c... 32 5.4
UniRef50_Q01035 Cluster: G-protein coupled receptor homolog ECRF... 32 5.4
UniRef50_A7SJD3 Cluster: Predicted protein; n=1; Nematostella ve... 32 7.2
UniRef50_UPI0000D996D8 Cluster: PREDICTED: similar to transmembr... 31 9.5
UniRef50_Q6R7H7 Cluster: ORF47; n=1; Ostreid herpesvirus 1|Rep: ... 31 9.5
UniRef50_A5B7S2 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
UniRef50_Q9UKB5 Cluster: Adherens junction-associated protein 1;... 31 9.5
>UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212;
Eukaryota|Rep: 40S ribosomal protein S24 - Homo sapiens
(Human)
Length = 133
Score = 205 bits (501), Expect = 3e-52
Identities = 95/113 (84%), Positives = 103/113 (91%)
Frame = -3
Query: 391 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 212
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 211 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKK
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116
>UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6;
Eukaryota|Rep: 40S ribosomal protein S24-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 133
Score = 160 bits (389), Expect = 1e-38
Identities = 77/118 (65%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Frame = -3
Query: 403 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 227
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118
>UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorchis
sinensis|Rep: 40S ribosomal protein S24 - Clonorchis
sinensis
Length = 139
Score = 144 bits (349), Expect = 9e-34
Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
Frame = -3
Query: 382 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 203
IRTRKFM+NRLL R+QMV D+LHPG+ +S +IRE+LAK YK +PD+VF FGF+T+FGG
Sbjct: 7 IRTRKFMSNRLLFRRQMVVDILHPGRCVLSLKDIRERLAKTYKTSPDMVFAFGFRTHFGG 66
Query: 202 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRM-KKGPWYQ 38
GKSTGFAL+YD+LD AKKFEP++RL R + P R++ +ER + ++ W++
Sbjct: 67 GKSTGFALVYDSLDHAKKFEPRYRLIRVKWVAGRHPQRQKVEERTQKQGEEDSWHE 122
>UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 166
Score = 131 bits (316), Expect(2) = 2e-32
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = -3
Query: 385 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 209
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 208 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 122
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 30.3 bits (65), Expect(2) = 2e-32
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 121 HGLYEKKRPTRKQRKERKNRMKK 53
+GL K +RKQ KERKNR KK
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKK 150
>UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24,
putative; n=1; Plasmodium falciparum 3D7|Rep: 40S
ribosomal subunit protein S24, putative - Plasmodium
falciparum (isolate 3D7)
Length = 133
Score = 124 bits (298), Expect = 1e-27
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Frame = -3
Query: 385 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 209
TIR +K+M+N LL RKQ ++LHP K +V+K E++E+LAKMYK+ + + +FGFKT F
Sbjct: 6 TIRVKKYMSNPLLRRKQFALEILHPNKGSVAKKEVKERLAKMYKLNNVNTIVLFGFKTLF 65
Query: 208 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKK-RPTRKQRKERKNRMKK 53
GGG++ GF LIY +D KKFE K+RL R GL +K+ + R+ KE KNR KK
Sbjct: 66 GGGRTKGFGLIYKNVDAVKKFEKKYRLVREGLIDKETKAGRRASKELKNRRKK 118
>UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S24 - Entamoeba histolytica HM-1:IMSS
Length = 140
Score = 122 bits (293), Expect = 5e-27
Identities = 61/111 (54%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Frame = -3
Query: 385 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 209
TIRTR + N LL RKQ+V D+ HPG TEI+EKLAKMYKV + + GF T +
Sbjct: 9 TIRTRNLIVNPLLCRKQVVVDIYHPGIVQPKFTEIKEKLAKMYKVKDVQTIVLNGFVTKY 68
Query: 208 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 56
GGGK++GFALIYDTL KKF PKH+L R GL +K + RK RKE K + +
Sbjct: 69 GGGKTSGFALIYDTLSALKKFVPKHQLIRAGLDKKTKAPRKARKEHKKKWR 119
>UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S24 -
Ostreococcus tauri
Length = 134
Score = 121 bits (291), Expect = 9e-27
Identities = 67/124 (54%), Positives = 82/124 (66%), Gaps = 20/124 (16%)
Frame = -3
Query: 364 MTNRLLARKQMV-----------CDVLHPGKPTVSK--------TEIREKLAKMYKVTPD 242
MTNRLL R+Q V CDVLHPG+ VSK E++EK+AKMY V+ +
Sbjct: 1 MTNRLLQRRQFVRLTNVFHQSQICDVLHPGRANVSKVRYIRGAGAELQEKIAKMYNVSDE 60
Query: 241 -VVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKN 65
V +FGF+T FGGGKSTGF LIYD +D KKFEPKHRL R GL + + +RK KE+KN
Sbjct: 61 KCVSIFGFRTAFGGGKSTGFGLIYDNIDAFKKFEPKHRLIRAGLKDAVQKSRKNIKEKKN 120
Query: 64 RMKK 53
R+KK
Sbjct: 121 RVKK 124
>UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6;
Eukaryota|Rep: 40s ribosomal protein s24 -
Cryptosporidium parvum Iowa II
Length = 159
Score = 121 bits (291), Expect = 9e-27
Identities = 60/113 (53%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Frame = -3
Query: 385 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 209
T+R R+F+ N LLARKQ V DV+HP VSK++++ KLAK+YKV + + +FGFKT F
Sbjct: 33 TVRVRQFLNNPLLARKQFVVDVIHPSLGGVSKSDLKAKLAKLYKVQDANCIVLFGFKTAF 92
Query: 208 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT-RKQRKERKNRMKK 53
GGG+S+GF +IY+ + KKFE ++R R G+ EK T RK RKE KNR KK
Sbjct: 93 GGGRSSGFCVIYNNISALKKFEHRYRQVRMGIAEKVTATGRKGRKETKNRRKK 145
>UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S24e containing protein - Tetrahymena
thermophila SB210
Length = 149
Score = 117 bits (281), Expect = 1e-25
Identities = 56/113 (49%), Positives = 75/113 (66%)
Frame = -3
Query: 391 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 212
T IRT+K + N LL+R+Q+ DVLHP PT SK +IRE+LAK KV V V+GF T
Sbjct: 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQ 61
Query: 211 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
+GGGKSTGFAL+YD K+EP +RL + + +K TR+ KE K ++K+
Sbjct: 62 YGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKR 114
>UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4;
Leishmania|Rep: 40S ribosomal protein S24e - Leishmania
major
Length = 137
Score = 112 bits (270), Expect = 3e-24
Identities = 62/122 (50%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Frame = -3
Query: 409 FKMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGK-PTVSKTEIREKLAKMYKVTPDV-- 239
F+ + IRT +F N+LL RKQ + +V HP TV IR+KLA +YKV PD
Sbjct: 3 FQKKKAEVCIRTSQFKVNKLLNRKQFIVEVNHPHWCGTVPTQLIRKKLATLYKV-PDASQ 61
Query: 238 VFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRM 59
V +FGFKT FGGGK+TGF LIYD L K+FEP +R R G + + P RK KER+NR
Sbjct: 62 VSLFGFKTKFGGGKTTGFGLIYDDLASLKRFEPNYRKTRMGFGKARLPARKSVKERRNRN 121
Query: 58 KK 53
KK
Sbjct: 122 KK 123
>UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein S24
- Trichomonas vaginalis G3
Length = 140
Score = 110 bits (265), Expect = 1e-23
Identities = 51/114 (44%), Positives = 73/114 (64%)
Frame = -3
Query: 385 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 206
++ RK++ N+LL RKQ V D+ H G ++ EI++++A K D+V +FG +T FG
Sbjct: 5 SVHIRKYIVNKLLDRKQFVIDMQHLGAKAPTRDEIKDEVASRLKANKDLVVIFGLETKFG 64
Query: 205 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKGPW 44
GG +TGF +YD+LD KK EPKHRL + GL EK + TR+ RK + R K W
Sbjct: 65 GGHTTGFGFVYDSLDALKKTEPKHRLIKAGLAEKGKVTRRMRKNAR-RQKVKVW 117
>UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 182
Score = 103 bits (246), Expect = 3e-21
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Frame = -3
Query: 391 TATIRTRKFMTNRLLA-RKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 215
T ++TRK + + L R+Q+ ++LHP KPT S+ + ++LA YK V V+G +T
Sbjct: 34 TFIVKTRKVLLKQSLEIRRQLSVELLHPNKPTPSQESVVKELASKYKADERNVVVYGLRT 93
Query: 214 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
FGG ++TGFALIYDT KFEPK RL R G+ K+ +RK KE K+++KK
Sbjct: 94 TFGGNRTTGFALIYDTQQYLLKFEPKFRLRRRGIIPKRDGSRKGWKEVKSKLKK 147
>UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillardia
theta|Rep: 40S ribosomal protein S24 - Guillardia theta
(Cryptomonas phi)
Length = 129
Score = 100 bits (239), Expect = 2e-20
Identities = 48/111 (43%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Frame = -3
Query: 382 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFG 206
++T+KF N LL RKQ + + K +SK +R +L+K Y++ P ++F+FG K NFG
Sbjct: 10 LKTKKFKNNPLLKRKQFLLSIDRKKKFNISKEWLRIELSKYYRIKDPSLIFIFGLKNNFG 69
Query: 205 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
G K + F IY L+ A+ EPKHRL ++ L + + + KQRKE+KN+MKK
Sbjct: 70 GFKCSAFVYIYYNLEAARVNEPKHRLIKNNLMKLELQSSKQRKEKKNKMKK 120
>UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal
protein S19; n=1; Xenopus laevis|Rep: Fragment of
Xenopus laevis ribosomal protein S19 - Xenopus laevis
(African clawed frog)
Length = 142
Score = 78.2 bits (184), Expect = 8e-14
Identities = 43/112 (38%), Positives = 67/112 (59%)
Frame = +2
Query: 56 LHSVLTFFTLFARGPLLLVQAVAS*PVLGFELLGQIECVVDQSESS*LATSEVCLETEYE 235
LHSVL FFTL + LL++ + V L ++ VVD +++ ATS+V +T+++
Sbjct: 21 LHSVLAFFTLLSGSLFLLIKPMLGKSVFRLILFCIVKRVVDHAKACSFATSKVSPKTKHK 80
Query: 236 HYIGSNLVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANSRC 391
+ I LVH +L +D L D F+WM I +HLLA Q+SV H+ + ++S C
Sbjct: 81 NNIWGCLVHLCQLFSDFSLGDSSFAWMKYINDHLLALQKSVCHKLSCSDSHC 132
>UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S24
- Encephalitozoon cuniculi
Length = 126
Score = 72.5 bits (170), Expect = 4e-12
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
NRLL+RK++ HPG P SK EIREK++++Y+ D V V K +G ++T A
Sbjct: 8 NRLLSRKELDVVAYHPGMPIPSKEEIREKISELYQTKKDNVVVMDLKNRYGTHRTTLKAK 67
Query: 178 IYDTLDLAKKFEPKHRLAR-HGLYEKKRPTRKQRKERKNRMK 56
IY ++++ E KH +A+ G P R ++ ERK R K
Sbjct: 68 IYSSIEVLSNIEKKHIVAKLTGKEFHVTPRRVRKDERKKRYK 109
>UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4;
Thermococcaceae|Rep: 30S ribosomal protein S24e -
Pyrococcus abyssi
Length = 99
Score = 67.7 bits (158), Expect = 1e-10
Identities = 31/94 (32%), Positives = 53/94 (56%)
Frame = -3
Query: 382 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 203
I+ + N+L+ RK++ ++ HPG+PT S+ +++ KL M + P+ + ++ FG
Sbjct: 3 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGS 62
Query: 202 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKK 101
KS G+A Y D EP++ L R G+ EKK
Sbjct: 63 YKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKK 96
>UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S24e -
Pyrobaculum aerophilum
Length = 121
Score = 65.3 bits (152), Expect = 6e-10
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N+LLAR++++ + +H T ++ +RE +AK + VFV KT FG G+S
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGIDISNVFVRRIKTEFGRGRSLAEVH 73
Query: 178 IYDTLDLAKKFEPKHRLARH------GLYEKKRPTRKQRKERKNRMKK 53
+Y+ +A+ EP + LAR+ L E+ + R +R+E+K R KK
Sbjct: 74 VYNDSKIARVIEPLYILARNLGEEGKKLLEEAKKRRNERREKKKRKKK 121
>UniRef50_A3DMS7 Cluster: 30S ribosomal protein S24e; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S24e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 118
Score = 62.1 bits (144), Expect = 6e-09
Identities = 37/112 (33%), Positives = 60/112 (53%)
Frame = -3
Query: 406 KMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVF 227
K+ E T I K+ N L+ R+++V + H GK T S+ IR + AK+Y V + V+V
Sbjct: 6 KIGEFTGEIVVDKY--NPLVKRREVVIRIAHIGKSTPSRGLIRHETAKIYGVEVEKVYVR 63
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKER 71
T +G G S IYD+++ AK+FEP + + R+ + + KE+
Sbjct: 64 EINTEYGLGVSNATIHIYDSVERAKQFEPPYVIKRNEYASQSYQLEQMMKEQ 115
>UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein
S24e - Thermofilum pendens (strain Hrk 5)
Length = 106
Score = 58.4 bits (135), Expect = 7e-08
Identities = 29/102 (28%), Positives = 54/102 (52%)
Frame = -3
Query: 388 ATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNF 209
+++R + N+L+ R++++ ++ H G T S+ ++ E L M + V T +
Sbjct: 4 SSLRIIQEKVNKLVGRRELLVEIHHQGSGTPSRRDVAEALRNMLGTGGSAIVVRKLVTRY 63
Query: 208 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQ 83
G G S IYD+ K FEPKH L R+GL +++ +++
Sbjct: 64 GQGVSEALIHIYDSDVKMKMFEPKHILRRNGLIQEQEAKKQE 105
>UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S24E-like protein - Metallosphaera sedula DSM 5348
Length = 113
Score = 54.8 bits (126), Expect = 9e-07
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N+++ RK++ V H G PT S+ +IR+ ++ D+V + T +G G S
Sbjct: 23 NKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKEDLVVIRKINTGYGAGISEATIH 82
Query: 178 IYDTLDLAKKFEPKHRLAR 122
+Y D+ KFEP H + R
Sbjct: 83 VYSEKDVLSKFEPAHLVNR 101
>UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S24e -
Methanopyrus kandleri
Length = 116
Score = 54.0 bits (124), Expect = 2e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL RK++ V H T K+E+ KLA + V +VV + ++ FG ++ G+A
Sbjct: 11 NPLLYRKEVKFVVRHEDSGTPQKSEVLRKLAAILDVDKEVVLIDRMESEFGKRETKGYAK 70
Query: 178 IYDTLDLAKKFEPKHRLARH 119
IY +++ + EP+H + RH
Sbjct: 71 IYKSMEHLEDIEPEHMVERH 90
>UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1;
Caldivirga maquilingensis IC-167|Rep: 30S ribosomal
protein S24e - Caldivirga maquilingensis IC-167
Length = 155
Score = 53.2 bits (122), Expect = 3e-06
Identities = 32/114 (28%), Positives = 55/114 (48%)
Frame = -3
Query: 394 GTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 215
G ++ + N LL RK++ V H G PT + ++RE+LAK P++ +V T
Sbjct: 36 GKVQVKVIEQFNNPLLQRKEVKAIVYHVGLPTPQRLQLREELAKALGSNPELTYVTHVYT 95
Query: 214 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
+G G S +Y + A+ EP + R+ ++ + R + K R+ KK
Sbjct: 96 QYGVGVSRIEVHVYFDKNTAELVEPLYVRLRNMPKDQAKKIRDELKSRRKSEKK 149
>UniRef50_O29151 Cluster: 30S ribosomal protein S24e; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S24e -
Archaeoglobus fulgidus
Length = 110
Score = 53.2 bits (122), Expect = 3e-06
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL R+++ C + GK T S+ E+R K+A + P+ V V KT FG ++ +
Sbjct: 14 NPLLRRREVYCRLSFEGK-TPSRKEVRGKIAGLMNAEPERVVVDYIKTEFGKTEAKCYVK 72
Query: 178 IYDTLDLAKKFEPKHRLARHGLYEK 104
IYDT++ +K E +H + R+ + E+
Sbjct: 73 IYDTVEDLQKIEEEHIIERNKVEEQ 97
>UniRef50_Q9YCY0 Cluster: 30S ribosomal protein S24e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S24e -
Aeropyrum pernix
Length = 118
Score = 52.4 bits (120), Expect = 5e-06
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N L+ R+++V + H KPT + +R+KLA++ V +++ KT +G G S
Sbjct: 28 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVH 87
Query: 178 IYDTLDLAKKFEPKHRLARHG 116
+YD+ + A FEPK+ + R+G
Sbjct: 88 VYDSPERALSFEPKYIIERNG 108
>UniRef50_Q74M50 Cluster: 30S ribosomal protein S24e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S24e -
Nanoarchaeum equitans
Length = 94
Score = 50.4 bits (115), Expect = 2e-05
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N+L R + + V HP + T ++ E +EK+A+M V + + + + +G S +A
Sbjct: 12 NKLFDRTEYIIQVEHPKEKTPTREEAKEKIAEMLNVDKNKLVIKKIVSKYGLPYSFIYAR 71
Query: 178 IYDTLDLAKKFEPKHRLARHGL 113
+YD +D AK+ E K L R+ L
Sbjct: 72 VYDNIDTAKRVELKQILRRNNL 93
>UniRef50_O26367 Cluster: 30S ribosomal protein S24e; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S24e -
Methanobacterium thermoautotrophicum
Length = 100
Score = 50.0 bits (114), Expect = 3e-05
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL RK++ + L+ G+ T E++ KL M D++ V FG ++TG+A
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDADKDLLVVDKIDQGFGEPRATGYAK 70
Query: 178 IYDTLDLAKKFEPKHRLARH 119
IY++ + + EP+H + ++
Sbjct: 71 IYESAEKLTEIEPEHVIKKN 90
>UniRef50_Q975Q9 Cluster: 30S ribosomal protein S24e; n=3;
Sulfolobus|Rep: 30S ribosomal protein S24e - Sulfolobus
tokodaii
Length = 120
Score = 47.2 bits (107), Expect = 2e-04
Identities = 29/111 (26%), Positives = 56/111 (50%)
Frame = -3
Query: 406 KMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVF 227
K+SE I R + N ++ R+++ V H G T+S+ ++ + +A Y D+V +
Sbjct: 10 KISEKAEGIVERD-IKNNVIGRRELYIKVFHIGSGTISRKDMIKAIASSYGAQEDLVVIK 68
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKE 74
T +G G S A IY+ ++FEP++ + R + K+ + +K+
Sbjct: 69 KIHTLYGAGISYVRANIYNDKKTLQEFEPQYLIGRDTGQKVKKGGKGAQKQ 119
>UniRef50_Q8PZ95 Cluster: 30S ribosomal protein S24e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S24e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 101
Score = 46.4 bits (105), Expect = 3e-04
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = -3
Query: 382 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 203
I+ K N LL R+++ V + G T S+ ++R KLA M +++ + KT +G
Sbjct: 3 IKIIKDKKNPLLNRRELDFIVKYEGS-TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGM 61
Query: 202 GKSTGFALIYDTLDLAKKFEPKHRLARHGL 113
+S G+A +Y+ D K+ E ++ L R+ +
Sbjct: 62 QESKGYAKLYEDADRMKQVEQEYVLKRNAV 91
>UniRef50_Q6L0P8 Cluster: 30S ribosomal protein S24e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S24e -
Picrophilus torridus
Length = 102
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N+LL RK++ + T S+ +IR+ LA Y ++ V + G + G+A
Sbjct: 14 NKLLFRKEINYTIKFENDKTPSREDIRKLLANNYGSDESLIIVDKNRQETGKHEIKGYAK 73
Query: 178 IYDTLDLAKKFEPKHRLARHGLYEKK 101
IYDT + A +EP + L R+ L K+
Sbjct: 74 IYDTKEHAMLYEPDYELFRNKLKVKE 99
>UniRef50_P19953 Cluster: 30S ribosomal protein S24e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S24e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 102
Score = 43.6 bits (98), Expect = 0.002
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N +L R + +V+H + T S+ +R+ LA + V + T FG K+ G+A
Sbjct: 11 NPMLHRTDVRFEVVHD-EATPSRLSVRDSLAATLNKDAEEVVIHKLDTKFGMRKTVGYAK 69
Query: 178 IYDTLDLAKKFEPKHRLARH 119
+YD + A+ E H L R+
Sbjct: 70 VYDNPEYARDVEQDHMLERN 89
>UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1;
Caenorhabditis elegans|Rep: Uncharacterized protein
T26G10.3 - Caenorhabditis elegans
Length = 91
Score = 42.3 bits (95), Expect = 0.005
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3
Query: 334 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 236
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>UniRef50_A7I4V3 Cluster: SSU ribosomal protein S24E; n=1;
Candidatus Methanoregula boonei 6A8|Rep: SSU ribosomal
protein S24E - Methanoregula boonei (strain 6A8)
Length = 99
Score = 40.3 bits (90), Expect = 0.021
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL+R+++ + + G T S+ +I KL + +V + K+NFG G A
Sbjct: 11 NELLSRREIAFTLTYDGA-TPSRLQIIGKLCALLNTKDPLVVLDSLKSNFGKMVIVGKAR 69
Query: 178 IYDTLDLAKKFEPKHRLAR 122
IYD+ D KK E + AR
Sbjct: 70 IYDSEDAKKKTEHPYLSAR 88
>UniRef50_P54032 Cluster: 30S ribosomal protein S24e; n=1;
Methanocaldococcus jannaschii|Rep: 30S ribosomal protein
S24e - Methanococcus jannaschii
Length = 101
Score = 40.3 bits (90), Expect = 0.021
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL RK+ V H G PT + +++ KLA + D++ V G ++ G+A
Sbjct: 11 NPLLKRKEYRFIVDHDG-PTPTFKDVKLKLAAILNANKDLLIVEKIVEEAGMQRARGYAK 69
Query: 178 IYDTLDLAKKFEPKHRLARHGLYEK 104
+YD ++ K E +H L ++ + E+
Sbjct: 70 LYDNEEMLKLVEREHILRKNKIEEE 94
>UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 204
Score = 39.9 bits (89), Expect = 0.027
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -3
Query: 190 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 62
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>UniRef50_Q2FS46 Cluster: 30S ribosomal protein S24e; n=1;
Methanospirillum hungatei JF-1|Rep: 30S ribosomal
protein S24e - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 112
Score = 38.3 bits (85), Expect = 0.083
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL RK++ + G T S+ + KLA M D + + FG + TG A
Sbjct: 11 NVLLNRKEIGFSITFTGA-TPSRKMVHAKLAAMLSAPKDQLVIGSLHNRFGLTEITGDAR 69
Query: 178 IYDTLDLAKKFEPKH 134
+Y + + KK EP++
Sbjct: 70 VYTSAEYLKKIEPEY 84
>UniRef50_A2SR72 Cluster: Ribosomal protein S24e; n=2;
Methanomicrobiales|Rep: Ribosomal protein S24e -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 97
Score = 38.3 bits (85), Expect = 0.083
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = -3
Query: 358 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 179
N LL+R ++ + G T ++++I K+A M + + + K FG TG A
Sbjct: 11 NELLSRNELAFTASYDGA-TPARSDIGAKIAAMQNTPVENLILSPLKGRFGTRAVTGVAR 69
Query: 178 IYDTLDLAKKFEPKHRLAR 122
IYDT + K E + +AR
Sbjct: 70 IYDTPEALKATEREFLIAR 88
>UniRef50_Q7QAG9 Cluster: ENSANGP00000021262; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000021262 - Anopheles gambiae
str. PEST
Length = 1960
Score = 33.9 bits (74), Expect = 1.8
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 177 IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNL 356
+ A V PP+ V KP TN + TL +L F+ + ++ G P K+++ + + N
Sbjct: 1 MSAFEVSCTPPRAVAKPRTNESREPTLVLLGPFTPKATVVFEGVPVGKSARRLLIVRNTN 60
Query: 357 LVMNLRVRIVAVP 395
+ ++V + VP
Sbjct: 61 KTL-VQVNLTRVP 72
>UniRef50_Q5KM71 Cluster: Expressed protein; n=2; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 548
Score = 33.9 bits (74), Expect = 1.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 49 DPSSFCSYVLYAVC--AWASSSRTGRGELTCAWVRTSWP 159
D S C L+A C WA +++ ++TC W R WP
Sbjct: 454 DSLSGCGRPLHAECFRMWAVTAKKSGKDVTCVWCRNEWP 492
>UniRef50_Q08FF6 Cluster: Putative uncharacterized protein; n=2;
Mule deer poxvirus|Rep: Putative uncharacterized protein
- Deerpox virus W-1170-84
Length = 129
Score = 33.1 bits (72), Expect = 3.1
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = -3
Query: 307 KPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRL 128
KPT+ + ++ EKL K YK + F+ F T F +I D K+F K+
Sbjct: 37 KPTMDRIDLAEKLIKKYKDIRSLYFLLNI---FREMPDTEF-VIKQLSDYIKRFNRKYLE 92
Query: 127 ARHGLYEKKRPTRKQRKERKN 65
+ K +PT K++ +N
Sbjct: 93 QNDTTFGKTQPTIKRKHRFRN 113
>UniRef50_Q11SA1 Cluster: Chaperone with DnaJ domain; heat shock
protein; n=1; Cytophaga hutchinsonii ATCC 33406|Rep:
Chaperone with DnaJ domain; heat shock protein -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 179
Score = 33.1 bits (72), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 33 ISWYHGPFFILFLRSLRCLRVGLFFSYRPWR 125
I W + P FI + CL + LFFS + WR
Sbjct: 142 IMWQYHPMFIFVFLPVLCLSIYLFFSTKKWR 172
>UniRef50_Q9VT48 Cluster: CG8177-PA, isoform A; n=13; Diptera|Rep:
CG8177-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 1268
Score = 33.1 bits (72), Expect = 3.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 211 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 53
FGG K +L YD + E K R +RH Y +++ + + E KN++++
Sbjct: 133 FGGKKKIPPSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEE 185
>UniRef50_A4M8H6 Cluster: DNA-directed RNA polymerase, beta subunit;
n=3; Thermotogaceae|Rep: DNA-directed RNA polymerase,
beta subunit - Petrotoga mobilis SJ95
Length = 1187
Score = 32.7 bits (71), Expect = 4.1
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -3
Query: 199 KSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKGPWYQEI*R*V 20
KST +Y+ L+L KK+E K H + E K+R E++ R+ Y+EI +
Sbjct: 260 KSTYGMKLYEVLELLKKYEIKSVTVAHLVAEITLEKMKKRYEKEERLTSLEAYKEIFSKL 319
Query: 19 RP 14
+P
Sbjct: 320 KP 321
>UniRef50_Q14QN3 Cluster: Hypothetical abc transporter permease
component transmembrane protein; n=1; Spiroplasma
citri|Rep: Hypothetical abc transporter permease
component transmembrane protein - Spiroplasma citri
Length = 1415
Score = 32.3 bits (70), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 349 LARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYD 170
L + +V D L+ GK +KT+I K A +Y + + +F F G G S YD
Sbjct: 783 LTKNSLVSDYLYNGKWLSTKTDISAKNAHLYAQQLNNMIIFNFMV--GKGASLSIGTFYD 840
>UniRef50_Q01035 Cluster: G-protein coupled receptor homolog ECRF3;
n=3; Herpesviridae|Rep: G-protein coupled receptor
homolog ECRF3 - Saimiriine herpesvirus 2 (strain 11)
(SaHV-2) (Herpesvirus saimiri)
Length = 321
Score = 32.3 bits (70), Expect = 5.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 24 YL*ISWYHGPFFILFLRSLRCLRVGLFFSYRPWRANLCLGSNFLARSSV 170
+L +S Y PF ++F+ LRCL + F + R W +G FL S V
Sbjct: 115 FLNLSIYWSPFILVFISVLRCLLI--FCATRLWVKKTLIGQVFLCCSFV 161
>UniRef50_A7SJD3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 353
Score = 31.9 bits (69), Expect = 7.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 239 YIGSNLVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANS 385
+I N +F + DLG+A + + + +H L R Q+VGH FA S
Sbjct: 251 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 298
>UniRef50_UPI0000D996D8 Cluster: PREDICTED: similar to transmembrane
protein SHREW1; n=1; Macaca mulatta|Rep: PREDICTED:
similar to transmembrane protein SHREW1 - Macaca mulatta
Length = 498
Score = 31.5 bits (68), Expect = 9.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 164 RSGQEVRTQAQVSSPRPVREEEAHAQ 87
RSGQ R A V SPRP R E H Q
Sbjct: 161 RSGQPARVPAPVWSPRPPRVERIHGQ 186
>UniRef50_Q6R7H7 Cluster: ORF47; n=1; Ostreid herpesvirus 1|Rep:
ORF47 - Ostreid herpesvirus 1
Length = 1412
Score = 31.5 bits (68), Expect = 9.5
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -3
Query: 259 YKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHG 116
YK+ P + F G T FG ST L Y L A K + KH + G
Sbjct: 452 YKIRPPIYFTSGSDTQFGSISSTASPLSY-ILSPAIKSDEKHTMVWRG 498
>UniRef50_A5B7S2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 421
Score = 31.5 bits (68), Expect = 9.5
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 239 SVRIRFQDKLRRWQVNWIRFDLRHT-RSGQEVRTQAQVSSPRP 114
S ++R D+L++W V+++ F++R T RSG T + V P
Sbjct: 77 SFQLRIADRLKQWIVDFLSFEMRMTSRSGSGTATGSGVXGQDP 119
>UniRef50_Q9UKB5 Cluster: Adherens junction-associated protein 1;
n=14; Tetrapoda|Rep: Adherens junction-associated
protein 1 - Homo sapiens (Human)
Length = 411
Score = 31.5 bits (68), Expect = 9.5
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 164 RSGQEVRTQAQVSSPRPVREEEAHAQ 87
RSGQ R A V SPRP R E H Q
Sbjct: 67 RSGQPARVPAPVWSPRPPRVERIHGQ 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,428,770
Number of Sequences: 1657284
Number of extensions: 10214705
Number of successful extensions: 32766
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 31113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32597
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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