Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b21
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 0.76
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 4.1
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 25 5.4
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 5.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 7.1
SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr ... 25 9.4
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 25 9.4
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 9.4
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 0.76
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 135 CCNYQLSHILFCITIQRCH*CILNFPTLPCPCFAAD 242
CCN++ H + H +N TL C C++ D
Sbjct: 109 CCNHESDHSRKHFEKNKKHCVFVNIITLKCHCYSCD 144
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 338 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 496
FT FLS +G SNT+ V+ + L AD ++R + + F R + +TT L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206
Query: 497 N*DD 508
DD
Sbjct: 207 EDDD 210
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 278 LQHIAPSITL*FFKYVL*MYFTSRFLSA 361
L H++P I+ +KY L F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -1
Query: 294 GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 154
G CC NG L L R +N+D +L S YT N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 143 LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 235
L T+THT HN L S L T ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 252 LDRNQLQNTDMEVLESLEYTSDNVE 178
+D N +++D++ LEYT+DN E
Sbjct: 8 IDPNSSEDSDIQEDAELEYTADNPE 32
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 215 CWKV*NTLVTTLNCYAKKY 159
CWK T+V L Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 210 ESLEYTSDNVELLCKKVCVIVDNYNKYYQKN 118
+S+EY +N++ + K+ +VD N YY +
Sbjct: 229 DSVEYV-ENIQYIDGKIQELVDKMNNYYNND 258
>SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 79
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 51 RCIXXXXNKTK*YNKIWYLFIHNFF 125
RC+ K + YN+ W F+H F
Sbjct: 16 RCLHAAKAKEQPYNERWMAFVHQEF 40
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 76 KQNDIIKFGIYLYTIFLVILVVII 147
K N+I+KF +Y +FL+ L+ ++
Sbjct: 17 KFNNIVKFDLYNVLLFLLFLLPVL 40
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 194 VYSKLSNTSMSVFCS 238
VYS L+NT++ FCS
Sbjct: 133 VYSSLANTTLEEFCS 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,058
Number of Sequences: 5004
Number of extensions: 50080
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -