Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b21
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical ... 31 0.39
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 29 1.6
Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical p... 28 3.7
Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical p... 28 3.7
Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical p... 27 6.4
AF047657-2|AAK18950.2| 358|Caenorhabditis elegans Serpentine re... 27 6.4
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr... 27 8.5
U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical pr... 27 8.5
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 27 8.5
>AF022967-2|AAB69880.1| 305|Caenorhabditis elegans Hypothetical
protein C13A2.9 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 438 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 319
GL+ S IFN L A++LL+ N +K K I+N +
Sbjct: 12 GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -1
Query: 465 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 292
C + INL +N +F IF I+H +NVLLV +IY + + Y +V+
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316
Query: 291 AMCC-NGDCLAVVVLDRNQLQNT 226
+ C N D L V R + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339
>Z99280-3|CAE18018.1| 215|Caenorhabditis elegans Hypothetical
protein Y57G11B.7 protein.
Length = 215
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 195 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 296
CILNF LP A T PN+ HC+ +L
Sbjct: 3 CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36
>Z70718-10|CAA94679.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -1
Query: 378 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 211
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 210 -ESLEYTSDNVELLCKKVCVIV 148
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z68879-11|CAA93090.1| 512|Caenorhabditis elegans Hypothetical
protein C04G2.11 protein.
Length = 512
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = -1
Query: 378 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 211
+ L N L+ R V I+NT L + ++ GD L + +L+ +L N ++ L
Sbjct: 92 ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151
Query: 210 -ESLEYTSDNVELLCKKVCVIV 148
++ +N L +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173
>Z81076-12|CAB03061.2| 161|Caenorhabditis elegans Hypothetical
protein F35C5.11 protein.
Length = 161
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 499 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 407
I+C +CG K+P AKN + + V +Y
Sbjct: 21 IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51
>AF047657-2|AAK18950.2| 358|Caenorhabditis elegans Serpentine
receptor, class h protein270 protein.
Length = 358
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 465 ILCVTPHSSHSIKTIMLN--FWQIL 533
ILC TP S S+K M N FW +L
Sbjct: 39 ILCKTPDSMKSVKWSMFNLHFWSVL 63
>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
W09D10.2 protein.
Length = 1335
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 292 TFNYTVIFQICIINVFHVPLF 354
TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196
>U40938-6|AAA81698.1| 655|Caenorhabditis elegans Hypothetical
protein D1009.1a protein.
Length = 655
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 322 CIINVFHVPLFERVRNKQYISRQMH 396
CI N+ +P+F+ R K IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 295 FNYTVIFQICIINVFHVPLF-ERVRNKQYISRQMHNVKN 408
FN+ + IC + P F ER RNKQYI +M+ V N
Sbjct: 359 FNHYKVKSICDV----WPDFNERERNKQYIKTEMNQVPN 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,433
Number of Sequences: 27780
Number of extensions: 292358
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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