Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16b21
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   0.64 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.64 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   0.64 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   0.64 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.5  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.9  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 340 HVPLFERVRNKQYI 381
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 106 KYQILLYHFVLFNN*RIQRHIYIPN 32
           +Y +L+Y F   ++ RIQ H + P+
Sbjct: 332 RYGLLIYDFFKDSSFRIQHHFFYPD 356


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 340 HVPLFERVRNKQYI 381
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 340 HVPLFERVRNKQYI 381
           HVP+F+R  N++YI
Sbjct: 365 HVPIFDRYINREYI 378


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 270 NRHCNTSHLQLHCNFSNMY 326
           N++CN   L +  NF+N Y
Sbjct: 92  NKNCNAGSLTVKKNFANKY 110


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 288 SHLQLHCNFSNMYYKCISRPA 350
           SH +L C+  + +Y C+   A
Sbjct: 83  SHTRLSCDCDDKFYDCLKNSA 103


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 288 SHLQLHCNFSNMYYKCISRPA 350
           SH +L C+  + +Y C+   A
Sbjct: 88  SHTRLSCDCDDKFYDCLKNSA 108


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 288 SHLQLHCNFSNMYYKCISRPA 350
           SH +L C+  + +Y C+   A
Sbjct: 88  SHTRLSCDCDDKFYDCLKNSA 108


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 301 YTVIFQICIINVFHVPLFERVRN-KQYI 381
           +T + +ICI     + L E +RN  +YI
Sbjct: 323 FTTVHRICIGETMPMELIENLRNHPEYI 350


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 441 GLFFAQPGILCVTPHSSHSI 500
           GL     G++CV   S HSI
Sbjct: 67  GLKLLSDGLMCVEKDSIHSI 86


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 366 PNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCLAV 259
           P A    + K +Y+  L NY+ +   +  N D L V
Sbjct: 13  PGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTV 48


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 288 SHLQLHCNFSNMYY 329
           S L   CN+SN YY
Sbjct: 305 SSLSNSCNYSNNYY 318


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 428 LYRPRFIFCATRHFVRH 478
           +YRP  +   T+ F+RH
Sbjct: 6   VYRPTIVKKRTKKFIRH 22


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 266  KQSPLQHIAPSITL 307
            +QSP QH+ P  TL
Sbjct: 1007 QQSPQQHVLPGKTL 1020


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 345 DVKYIYNTYLKNYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYTS 190
           D K +Y+  L NY+ +   +  N D + VV L     Q  D+ + + +  T+
Sbjct: 20  DAKRLYDDLLSNYNRLIRPVSNNNDTV-VVKLGLRLSQLIDLNLKDQILTTN 70


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +2

Query: 101 VFIYTQFFW*YLL*LSTITHTFLHNNSTLSLVYSKLSNTSMSVFCS*FRSNTTTAKQSPL 280
           +F+ T F + Y + +  I + +    S +      L   +  +     RSN  T+ QS  
Sbjct: 210 IFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTSSQSAE 269

Query: 281 QHIAPSITL*FFKYVL 328
             IA +     F YVL
Sbjct: 270 IRIAKAAITICFLYVL 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,564
Number of Sequences: 438
Number of extensions: 4078
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)