Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16b20
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   270   1e-72
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   266   1e-71
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.4  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   5.9  
06_03_0543 + 21967787-21970261                                         29   5.9  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.8  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   7.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  270 bits (661), Expect = 1e-72
 Identities = 122/192 (63%), Positives = 152/192 (79%)
 Frame = -3

Query: 821 NVXFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVL 642
           N  FQME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVL
Sbjct: 33  NCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVL 92

Query: 641 KFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALC 462
           KFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C
Sbjct: 93  KFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152

Query: 461 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 282
           +TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPE
Sbjct: 153 DTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPE 212

Query: 281 ESEKDEQQAKEQ 246
           E+++ E++A  Q
Sbjct: 213 EAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  266 bits (653), Expect = 1e-71
 Identities = 120/188 (63%), Positives = 148/188 (78%)
 Frame = -3

Query: 821 NVXFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVL 642
           N  FQME YVYKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVL
Sbjct: 33  NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVL 92

Query: 641 KFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALC 462
           KFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP IA C
Sbjct: 93  KFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFC 152

Query: 461 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 282
           +TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDPE
Sbjct: 153 DTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPE 212

Query: 281 ESEKDEQQ 258
           E+++ E++
Sbjct: 213 EAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 138 TRCSSCFWSTPCSRRMVCPGTR*VEHN 58
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 639 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 532
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 389 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 300
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 138 TRCSSCFWSTPCSRRMVCPGTR*VEHN 58
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 635 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 790
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,545,484
Number of Sequences: 37544
Number of extensions: 493971
Number of successful extensions: 1356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)