Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b19
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.17
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.40
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.70
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.6
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom... 27 3.7
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 3.7
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 4.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 6.5
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 6.5
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 6.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 6.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 6.5
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 6.5
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 8.6
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 8.6
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 31.1 bits (67), Expect = 0.17
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Frame = +2
Query: 362 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 535
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 536 KLVTSGW---NLLCIKANVLNTTAAICRVSALFLNISNSGWVISRVLSIAMYLLSANLFS 706
+ T+GW N C+ V N +A+ +S I R ++ S++LF
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVS-----ILRSFALCNATTSSSLFR 291
Query: 707 EFHSF 721
+ S+
Sbjct: 292 QIASY 296
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = -1
Query: 576 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 397
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 396 FDTEALVNF 370
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 345 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 226
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 633 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 490
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 734 LSSLESYETLKINWRSANTWLCSAPWK*PSRCWK 633
+++ +S + L I RS T S WK PS+ WK
Sbjct: 139 VAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWK 172
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 384 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 238
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 674 AMYLLSANLFSEFHSFLNCLEF 739
A+Y+ +A++ SEF FLN L++
Sbjct: 53 ALYVQNADIHSEFEEFLNKLQY 74
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 484 GNACVISFSDHKLHFVSKISNK 549
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 267 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 166
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 183 YLHYYIFKNYGVFEYCKSLTDHSLFTN 103
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 6.5
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -1
Query: 402 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 241
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 240 ITEVE 226
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 481 SGNACVISFSDHKLHFVSKISNKW 552
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 338 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 454
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -1
Query: 333 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 154
F S +NTT +DD+ ++ D + E + L+ +V H + ++ Y
Sbjct: 795 FKPSNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFLVGHVAIKQLVYIEY 854
Query: 153 GVFEYCKSLTD 121
E+ + D
Sbjct: 855 CEAEFKRRKAD 865
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/90 (20%), Positives = 36/90 (40%)
Frame = -1
Query: 333 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 154
FG K +D + + + D++ + ++ + + L L+ +LH +I
Sbjct: 349 FGHIDEKTIRSTDPFANRENLDFN-SIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
Query: 153 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 64
GV + T +L L + STK +
Sbjct: 408 GVLFHGPPGTGKTLMARVLAANCSTKNQKI 437
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 520 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 684
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +2
Query: 503 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 631
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 521 SILLVKLVTSGWNLLCIKANV 583
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/63 (25%), Positives = 26/63 (41%)
Frame = -1
Query: 642 LLEIFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT 463
+LEI D + ++VFST R++ LV ++ + E D IL
Sbjct: 292 ILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEK 351
Query: 462 ENE 454
N+
Sbjct: 352 RND 354
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = -1
Query: 378 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 217
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 216 YLTLLLI-VEHAYLHYY 169
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,677
Number of Sequences: 5004
Number of extensions: 57813
Number of successful extensions: 198
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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