Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16b01
         (865 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5ZRH5 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, wh...    34   4.0  
UniRef50_UPI000049A237 Cluster: phosphatidylinositol-glycan bios...    34   5.3  

>UniRef50_A5ZRH5 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 1111

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -1

Query: 439 ITSGFGVNFTKSPLTTLCAHHRDIFSIL*VRRFSLFGCVLSINQWMYIFINETTKSIKAT 260
           + + FG+    S L    AH++ +F ++    F + GC +  N  MYIFI       KA 
Sbjct: 292 VCTKFGIAEAASGLLASIAHNQFVFLLIVNIIFLIAGCFIDANSAMYIFIPIMLPVCKAL 351

Query: 259 GF 254
           G+
Sbjct: 352 GY 353


>UniRef50_A0D850 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 507

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 2   LSVNFNGRYIYLP*FTS*IRKNFII*KLNSFTKQSITILFNTLRLLRSH 148
           +S  F+G Y YL      ++K F I  +  F+K SIT + N   L+++H
Sbjct: 267 ISSEFDGNYFYLNCNIEILQKQFWIIDIEQFSKISITAMLNQNHLIKNH 315


>UniRef50_UPI000049A237 Cluster: phosphatidylinositol-glycan
           biosynthesis class O protein, putative; n=2; Entamoeba
           histolytica HM-1:IMSS|Rep: phosphatidylinositol-glycan
           biosynthesis class O protein, putative - Entamoeba
           histolytica HM-1:IMSS
          Length = 870

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 23/70 (32%), Positives = 37/70 (52%)
 Frame = +2

Query: 8   VNFNGRYIYLP*FTS*IRKNFII*KLNSFTKQSITILFNTLRLLRSHYCLLS*FFTGRLV 187
           + FN  +I +P F S     F++  LN+F   SI+I+F  L +L+SH   +S +    L 
Sbjct: 744 IQFNAGFIGIP-FYSFFGNGFLV-ILNTFFFPSISIIFGLLIILKSHPTGMSLYIQSSLC 801

Query: 188 SFFHFVYCLL 217
               F+Y L+
Sbjct: 802 LTTMFIYQLV 811


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,809,018
Number of Sequences: 1657284
Number of extensions: 16440172
Number of successful extensions: 33208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33207
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)