Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16b01
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    29   1.1  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   4.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   7.9  

>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 410 EITPYYTLCAPQGYILHIIS 351
           EI+PYYT   PQG+  H ++
Sbjct: 91  EISPYYTKALPQGFSFHPVT 110


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 518 SLHPVLPSHVYIVSLKRSL*RRHTTYVVL 604
           +LH  + SH YI++L R L      YVVL
Sbjct: 67  ALHARVSSHPYIITLHRVLETEDAIYVVL 95


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 315  IDNTQPNRENL-RTYNMENISLWCAQSVVRGDFVKLTPKPDVMWHKR 452
            +++T+P RE L ++Y  +NI +   +  V  DF   +P P  ++ K+
Sbjct: 2136 VNHTRPFREILLKSYRQKNIPISYQEIKVDLDFALRSPNPGDIFEKK 2182


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 528 GCNEANQQSIVHSYYQEHRLS*FTEIVYAT*HPA-LELTSRNH 403
           G     QQ++  S YQE     F E  + T HP  L+  +RNH
Sbjct: 584 GITPERQQTMTRSTYQESSQRPFHEDPFRT-HPGLLQAVARNH 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,288
Number of Sequences: 5004
Number of extensions: 76102
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)