Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16b01
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    25   0.85 
11_04_0445 + 17818190-17818874,17819730-17819749                       28   8.4  
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    28   8.4  
06_03_0333 - 19658344-19658363,19659286-19659916                       28   8.4  

>10_03_0021 +
           7129786-7130117,7130227-7130347,7131048-7131136,
           7131375-7131459,7131609-7131771,7132861-7132937,
           7133016-7133160,7133236-7133537,7133615-7133720,
           7134781-7134935,7135556-7135712,7135799-7135891,
           7136232-7136359,7136439-7136696,7136855-7137145,
           7137235-7137318,7138335-7138468,7138557-7138784,
           7139778-7139958,7140021-7140108,7140268-7140434,
           7140750-7141012,7141117-7141120
          Length = 1216

 Score = 25.4 bits (53), Expect(2) = 0.85
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -1

Query: 640 GNTIVDSKAVCAQDDVCSMSSSQTTFEAYNIHMTGEHRMQRSESAKHSSLILPRTSPFIV 461
           G  I+  +     D++ +   S TTF+  N      H M   E+    SL+ P    F +
Sbjct: 338 GEMIIGPRKTLLMDEISTGLDSSTTFQIVNCMRNFVHEM---EATVLMSLLQPAPETFEL 394

Query: 460 YRD 452
           + D
Sbjct: 395 FDD 397



 Score = 24.6 bits (51), Expect(2) = 0.85
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 343 FSLFGCVLSINQWMYIF---INETTKSIKATGFALPPACHLY*FSQETVNEMEK 191
           F LF  ++ +++   I+   I       K+ GF+LPP   +  F QE  ++ ++
Sbjct: 392 FELFDDLILLSEGKIIYQGPIKHVVDYFKSLGFSLPPRKGIADFLQEVTSKKDQ 445


>11_04_0445 + 17818190-17818874,17819730-17819749
          Length = 234

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 411 RNHPLLHFVRTTGIYSPYYK 352
           R H  LH V   GI+SPY++
Sbjct: 98  RKHLFLHIVEALGIWSPYFR 117


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 177 AVLLVFSISFTVSCENQYKWQAG 245
           A+L V   SF V CE ++KW  G
Sbjct: 175 AILAVILESFGVYCEGEFKWNCG 197


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 411 RNHPLLHFVRTTGIYSPYYK 352
           R H  LH V   GI+SPY++
Sbjct: 102 RKHLFLHIVEALGIWSPYFR 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,099,761
Number of Sequences: 37544
Number of extensions: 421634
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)