Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16b01
(865 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81492-7|CAB04032.1| 384|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 30 1.9
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 30 1.9
AF022970-1|AAB69895.1| 142|Caenorhabditis elegans Hypothetical ... 30 1.9
Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 9.9
>Z81492-7|CAB04032.1| 384|Caenorhabditis elegans Hypothetical
protein E03H4.11 protein.
Length = 384
Score = 32.3 bits (70), Expect = 0.46
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Frame = +3
Query: 6 QSTLTVDIFICHNLHHRFEKTSLFKNLILLL---NKASQYYLIPYVY*DHTIAYYPDFLQ 176
++ L DI + +++ +E+ + +K+L +LL +KA +Y +I + D + ++PD L
Sbjct: 174 EAKLYGDIIVV-DMNDTYEELT-YKSLAILLYGVSKAPRYQMIGKI--DEDVIFFPDKLT 229
Query: 177 AVLLVFSISFTVSCENQYKWQAGGK 251
A+ I T C YK QAG +
Sbjct: 230 ALYEQGIIDATPLCAYGYKIQAGAR 254
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
protein ZC101.2b protein.
Length = 1160
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
protein ZC101.2f protein.
Length = 2389
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
protein ZC101.2e protein.
Length = 3375
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
protein ZC101.2c protein.
Length = 2295
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
protein ZC101.2a protein.
Length = 2482
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 854 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 891
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 670 LKIRQDSWMRLEGLMVPFQRMIVIILNIDHSFVKSSYS 783
+KI + SW R++G + +++ + ++D +KS+Y+
Sbjct: 853 IKIIETSWQRVDGQQATREHLLMTLADLDTLLIKSTYN 890
>AF022970-1|AAB69895.1| 142|Caenorhabditis elegans Hypothetical
protein F13A2.1 protein.
Length = 142
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 327 QPNRENLRTYNMENISLWCAQSVVRGDFVKLTPKPDVMWH 446
+PNR + R M I LW V+ G + TP PD++ H
Sbjct: 3 RPNRRDNRFRIMIRIGLWILFLVILGMVLNGTPFPDILRH 42
>Z47073-2|CAA87373.1| 507|Caenorhabditis elegans Hypothetical
protein ZC506.3 protein.
Length = 507
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 22 SIYLFAIIYIIDSKKLHYLKT*FFY*TKHHNII*YLTFIEITLLPTILIFY 174
S+Y+F +I+++ ++K F TKH + L I P+I FY
Sbjct: 341 SVYVFVLIWLLTELNTFFMKHVFSVDTKHPVVFWRLILIAFISAPSIRQFY 391
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 369 YSPYYKSVGSPYSAVYYLSISG 304
YSP Y S GS YS YY + G
Sbjct: 280 YSPSYSSYGSSYSPSYYSNYYG 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,225,421
Number of Sequences: 27780
Number of extensions: 411993
Number of successful extensions: 1024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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