Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16a24
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O10359 Cluster: Uncharacterized 9.3 kDa protein; n=12; ... 90 2e-17
UniRef50_P41672 Cluster: Uncharacterized 59.7 kDa protein in HE6... 56 6e-07
UniRef50_Q8JMA7 Cluster: Putative uncharacterized protein; n=2; ... 40 0.041
UniRef50_O10358 Cluster: Uncharacterized 59.0 kDa protein precur... 39 0.054
UniRef50_P41674 Cluster: Uncharacterized 6.7 kDa protein in HE65... 36 0.51
UniRef50_Q639S8 Cluster: Transcriptional regulator, MarR family;... 34 1.5
UniRef50_UPI000150A866 Cluster: Tubulin-tyrosine ligase family p... 34 2.0
UniRef50_Q4HLQ6 Cluster: Membrane protein, putative; n=1; Campyl... 34 2.0
UniRef50_A7FQ91 Cluster: NlpC/P60 family protein; n=4; Clostridi... 34 2.0
UniRef50_Q22KJ7 Cluster: Cation channel family protein; n=2; Tet... 33 3.6
UniRef50_UPI00006CC9E3 Cluster: hypothetical protein TTHERM_0027... 32 6.2
UniRef50_A3DC80 Cluster: TPR repeat domain containing protein; n... 32 6.2
UniRef50_A7TLL8 Cluster: Putative uncharacterized protein; n=1; ... 32 6.2
UniRef50_UPI0000499954 Cluster: hypothetical protein 268.t00004;... 32 8.2
UniRef50_Q94883 Cluster: CG5838-PA; n=5; Drosophila|Rep: CG5838-... 32 8.2
UniRef50_Q6BQP2 Cluster: Debaryomyces hansenii chromosome E of s... 32 8.2
>UniRef50_O10359 Cluster: Uncharacterized 9.3 kDa protein; n=12;
Nucleopolyhedrovirus|Rep: Uncharacterized 9.3 kDa
protein - Orgyia pseudotsugata multicapsid polyhedrosis
virus (OpMNPV)
Length = 82
Score = 90.2 bits (214), Expect = 2e-17
Identities = 45/81 (55%), Positives = 57/81 (70%)
Frame = -1
Query: 400 MSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECL 221
MS+ VVEAC L F KLGYLFRA+ CLDIAL NLK LR++ I +VA ML KK +C
Sbjct: 1 MSMAQVVEACKLHAVFAKLGYLFRARVCLDIALANLKQLRQRVAIPQVANMLAKKEAQCC 60
Query: 220 QLKQKIDKKIAQRILIKIYTI 158
L++K++ +I R LIK+Y I
Sbjct: 61 LLREKLNTQIDNRSLIKLYKI 81
>UniRef50_P41672 Cluster: Uncharacterized 59.7 kDa protein in
HE65-PK2 intergenic region precursor; n=12;
Nucleopolyhedrovirus|Rep: Uncharacterized 59.7 kDa
protein in HE65-PK2 intergenic region precursor -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 530
Score = 55.6 bits (128), Expect = 6e-07
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = -3
Query: 497 RTITTGAMTQGQQIDALTQILQTYPNYSL 411
R +TTG MTQGQQIDALTQIL+TYPNYS+
Sbjct: 502 RAVTTGDMTQGQQIDALTQILETYPNYSV 530
>UniRef50_Q8JMA7 Cluster: Putative uncharacterized protein; n=2;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Mamestra configurata NPV-B
Length = 81
Score = 39.5 bits (88), Expect = 0.041
Identities = 22/77 (28%), Positives = 44/77 (57%)
Frame = -1
Query: 388 NVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQ 209
++ EA +LA F +L + +A C ++A L ++++ +V +M + KT EC +Q
Sbjct: 3 DITEALELAAQFEQLHFYDKAIECNNLATLFLNRIKQRKLNGDVLIMCDLKTLECATNRQ 62
Query: 208 KIDKKIAQRILIKIYTI 158
K++K+ +L+K Y +
Sbjct: 63 KLNKR-KDNLLLKKYIL 78
>UniRef50_O10358 Cluster: Uncharacterized 59.0 kDa protein
precursor; n=7; Nucleopolyhedrovirus|Rep:
Uncharacterized 59.0 kDa protein precursor - Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
Length = 529
Score = 39.1 bits (87), Expect = 0.054
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -3
Query: 497 RTITTGAMTQGQQIDALTQILQTYPNYSL 411
R + TG M G Q DALTQ+L T+ NYS+
Sbjct: 501 RVVNTGDMASGAQTDALTQVLDTFSNYSV 529
>UniRef50_P41674 Cluster: Uncharacterized 6.7 kDa protein in
HE65-PK2 intergenic region; n=3;
Nucleopolyhedrovirus|Rep: Uncharacterized 6.7 kDa
protein in HE65-PK2 intergenic region - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 58
Score = 35.9 bits (79), Expect = 0.51
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1
Query: 49 MMSSSQIIVCNKINIF 2
MMSSSQIIVCNKINIF
Sbjct: 1 MMSSSQIIVCNKINIF 16
>UniRef50_Q639S8 Cluster: Transcriptional regulator, MarR family;
n=2; Bacillus cereus|Rep: Transcriptional regulator,
MarR family - Bacillus cereus (strain ZK / E33L)
Length = 159
Score = 34.3 bits (75), Expect = 1.5
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = -1
Query: 331 RAKTCLDIALDNLKLLRRKTNIKE--VAVMLNKKTTECLQLKQKIDKKIAQRI 179
R T LDI D LK ++R NI+ ++V+ + +TE LQ++ ++ K++A +
Sbjct: 90 RRITLLDITEDGLKFIKRNNNIRTSFMSVLFDGFSTEELQVQTEVFKRLAHNL 142
>UniRef50_UPI000150A866 Cluster: Tubulin-tyrosine ligase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
Tubulin-tyrosine ligase family protein - Tetrahymena
thermophila SB210
Length = 728
Score = 33.9 bits (74), Expect = 2.0
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 68 TYNSAGKTSLKYDVIYFCTQNIELVMISSFDSVNFY*NTLCNFFIYFLFQLQTF 229
TYNS K +L++D+ ++ E+V S ++NFY N L N +++ + Q+F
Sbjct: 5 TYNSPQKQNLRHDMSLPQQKHQEVVYNESKTNINFYQNQLANGYMFQPNRYQSF 58
>UniRef50_Q4HLQ6 Cluster: Membrane protein, putative; n=1;
Campylobacter lari RM2100|Rep: Membrane protein,
putative - Campylobacter lari RM2100
Length = 521
Score = 33.9 bits (74), Expect = 2.0
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 9 FILLHTIICDDDIISQTCFTRTILLVKQV*NMMSFIFAHKILNSL*FHHLIV*IFIKIRC 188
+I+LH I D+ +T+ L + ++S I A K+ + FH+ + +F I
Sbjct: 82 YIILHFIFKQDEDYL-LFYTQNTLYISLALTLISLICARKLYDFNNFHYFLAALFFSISF 140
Query: 189 AIFLSIFCFNCKHSVVFLFSMTATS 263
+ L +F S FLF +++++
Sbjct: 141 WLILGLFILIFYTSFCFLFDISSSN 165
>UniRef50_A7FQ91 Cluster: NlpC/P60 family protein; n=4; Clostridium
botulinum|Rep: NlpC/P60 family protein - Clostridium
botulinum (strain ATCC 19397 / Type A)
Length = 367
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = -1
Query: 292 KLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKIA 188
+L +K IKE V L+KK+TE +QLK + +KK++
Sbjct: 139 ELKTKKEEIKEKKVALDKKSTEIVQLKAENEKKLS 173
>UniRef50_Q22KJ7 Cluster: Cation channel family protein; n=2;
Tetrahymena thermophila SB210|Rep: Cation channel family
protein - Tetrahymena thermophila SB210
Length = 2497
Score = 33.1 bits (72), Expect = 3.6
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = -1
Query: 439 YFKLTPTTLYNNNMSILNVVEAC-DLAHTFLKLGYLFRAKTCLDIALD-NLKLLRRKTNI 266
Y ++P T+ +SI+N++ AC A++ +G +F LD + N+K++ R
Sbjct: 1620 YGDISPHTIAEKILSIINMMIACGQFAYSVNSIGNIFEQFFRLDNEIQANMKIINRYMTN 1679
Query: 265 KEVAVMLNKKTTECLQLKQKIDK 197
K ++ L + E L+ K +K
Sbjct: 1680 KTISKNLQYQVREYLEYYWKQEK 1702
>UniRef50_UPI00006CC9E3 Cluster: hypothetical protein
TTHERM_00277110; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00277110 - Tetrahymena
thermophila SB210
Length = 1360
Score = 32.3 bits (70), Expect = 6.2
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -1
Query: 403 NMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVML 245
+MSIL V+ +L F K+G L A TC + + ++K +R +N+ + V L
Sbjct: 182 DMSILYFVKV-NLGICFYKIGLLEEAFTCFETCIMSIKKQQRDSNVNAILVKL 233
>UniRef50_A3DC80 Cluster: TPR repeat domain containing protein; n=1;
Clostridium thermocellum ATCC 27405|Rep: TPR repeat
domain containing protein - Clostridium thermocellum
(strain ATCC 27405 / DSM 1237)
Length = 321
Score = 32.3 bits (70), Expect = 6.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -1
Query: 442 KYFKLTPTTLYNNNMSILNVVEACDLAHTFLKLGYLF--RAKTCLDIALDNLKLLR 281
+YFK + N SI+ ++EAC FLK YLF + +D + +KL+R
Sbjct: 49 EYFKKSLAVDGNYTFSIIGLIEACVFRRKFLKAVYLFSKNRQKIIDKYIYRVKLVR 104
>UniRef50_A7TLL8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 500
Score = 32.3 bits (70), Expect = 6.2
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 92 SLKYDVIYFCTQNIELVMI---SSFDSVNFY*NTLCNFFIYFLFQLQTFCSFFV*HDCHF 262
+LK D++++ ++++++ SF S N N L F +LF L SF+ DC F
Sbjct: 59 TLKNDLLFYGLPLLKILIVFTMGSFLSFNNNFNNLWKFDTVYLFLLPLLMSFYFQTDCIF 118
Query: 263 LYVSFSTQQFQI 298
L + F I
Sbjct: 119 LNTILTFNSFDI 130
>UniRef50_UPI0000499954 Cluster: hypothetical protein 268.t00004; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical protein
268.t00004 - Entamoeba histolytica HM-1:IMSS
Length = 930
Score = 31.9 bits (69), Expect = 8.2
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = -1
Query: 388 NVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQ-LK 212
+V++ C + +K ++ LD + LK KTN E+A MLNK E ++ +
Sbjct: 803 DVIKVCVIGA--MKTSNMYLRIVALDFSYFLLKKANNKTNYGEIAEMLNKHIEEWMKVIV 860
Query: 211 QKIDKKIAQRILIKIYTI 158
+ ++K A +I + + T+
Sbjct: 861 EHSEQKYALKIALVMNTL 878
>UniRef50_Q94883 Cluster: CG5838-PA; n=5; Drosophila|Rep: CG5838-PA
- Drosophila melanogaster (Fruit fly)
Length = 709
Score = 31.9 bits (69), Expect = 8.2
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = -1
Query: 430 LTPTTLYNNNMSILNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAV 251
LT L N ++I+N E DL HT+L+ + C +D K LRR I+EVA
Sbjct: 346 LTDFYLANCTLAIINYDEEEDLLHTYLREKNI-PISLCYVSVID--KCLRRVFEIEEVAT 402
Query: 250 MLNKKTTECLQLKQKIDKKIAQ 185
+L + + +I K+++
Sbjct: 403 LLEQVKDLMQRHSTEIASKVSE 424
>UniRef50_Q6BQP2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 788
Score = 31.9 bits (69), Expect = 8.2
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = -1
Query: 391 LNVVEACDLAHTFLKLGYLFRAKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLK 212
L +V +LA T +K G +AKTC D AL L + ++++ A ++N+KT + +K
Sbjct: 532 LRLVINSNLALTLIKTGNYKQAKTCCDEALQ----LVTEDDLQDYAYLINEKTIKSWYIK 587
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,436,494
Number of Sequences: 1657284
Number of extensions: 8216504
Number of successful extensions: 19247
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19224
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -