Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a19
         (321 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   3.7  
AY745207-1|AAU93474.1|  103|Anopheles gambiae cytochrome P450 pr...    22   4.9  
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    21   8.6  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    21   8.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    21   8.6  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 241 GDKAHSFAERRVGHDARSGPISKQRHARLHHRILKR 134
           G   H  +    G  A +G    Q HA  HH  L++
Sbjct: 703 GGGGHHLSHHHGGAAAATGHHHHQHHAAPHHHSLQQ 738


>AY745207-1|AAU93474.1|  103|Anopheles gambiae cytochrome P450
           protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 247 GRGDKAHSFAERRVGHDAR 191
           G GD+ H FA    G+ AR
Sbjct: 60  GSGDQLHPFASLPYGYGAR 78


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/30 (26%), Positives = 12/30 (40%)
 Frame = +3

Query: 69  WRCFQLVFLLAFHLKNQTVCPARLRILWCN 158
           WR + L+F +A      + C       W N
Sbjct: 355 WRFYNLIFFIAHLTAMSSTCYNPFLYAWLN 384


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 162 ACRCLDIGPLRASCPT 209
           +C C  IG   ASC T
Sbjct: 938 SCNCDPIGSYNASCDT 953


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 223 FAERRVGHDARSGPISKQ 170
           FA+R + +D   GP++++
Sbjct: 613 FADRELEYDTADGPVTRR 630


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,026
Number of Sequences: 2352
Number of extensions: 6054
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21613350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)