Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a12
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.67 
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    31   0.88 
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    29   4.7  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   4.7  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    28   6.2  
AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z81030-16|CAB02712.2|  378|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z81030-15|CAC70075.2|  369|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical p...    28   8.2  
U60059-1|AAC47518.1|  376|Caenorhabditis elegans UNC-76 protein.       28   8.2  
U60058-1|AAC47517.1|  379|Caenorhabditis elegans UNC-76 protein.       28   8.2  
U28153-1|AAA68954.1|  385|Caenorhabditis elegans UNC-76 protein.       28   8.2  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 622 MYFFLTAQHASLVAICVDLYFCKLRS*NFSN 714
           +Y+   A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 225 DRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQH 49
           D  +   ++  Y     E +N   S ++RVV + A    K    P G V +TP K+ K  
Sbjct: 748 DNFSGGGSTPSYSKSYLEEMNRVMSTRKRVVEEAAEVQKKPNPAPSG-VTATPPKKAKTS 806

Query: 48  TNTPPH 31
            + PP+
Sbjct: 807 NSVPPN 812


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 292 LVGGFARNPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKRLDK*LFG 450
           + GG   +P        N L F  F    HSN  +A++ + ++ K++D  + G
Sbjct: 276 IAGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIG 328


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -1

Query: 201 STDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHT 46
           S +YD ED E  +   ++KR  + KR  NSKSK   +GK    PRK+ +  T
Sbjct: 24  SFNYDDEDYEPPSK-RTQKRSSLTKR--NSKSKTPEVGK---APRKQTEHFT 69


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 240 KTKSNDRLNNENTST----DYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVST 73
           K K   RL  EN       D D++DE+       +++   A+++  S SKK   GK    
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGK-KEP 230

Query: 72  PRKRLKQ 52
           P+K++K+
Sbjct: 231 PKKKVKK 237


>AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical
           protein Y67A6A.1 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 243 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 64
           TK KSN  ++   TS D + +D+         K    AK     K+K+    KVV+TP+K
Sbjct: 22  TKKKSNLSISKSQTSVDMNEKDKS--------KEAKEAKELKEKKAKEEAEKKVVATPKK 73


>AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical
           protein F59A7.5a protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 222 RLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRL 58
           R N   +S+  +  D++     + RK++   K+   +K KK+   K   T +K+L
Sbjct: 103 RSNKNASSSGSEENDQKDGQEDHHRKKKGATKKKVTTKKKKVTTKKPKKTTKKKL 157


>Z81030-16|CAB02712.2|  378|Caenorhabditis elegans Hypothetical
           protein C01G10.11a protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 228 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQH 49
           N+ L +E    D    ++E  N+F S    +  KR   +  +K  +GK  ++   +L Q+
Sbjct: 267 NESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYANDRKRKVGK--ASDASQLPQY 324

Query: 48  -TNTPPHYDHQ 19
            T T P+ DHQ
Sbjct: 325 LTATIPYNDHQ 335


>Z81030-15|CAC70075.2|  369|Caenorhabditis elegans Hypothetical
           protein C01G10.11b protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 228 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQH 49
           N+ L +E    D    ++E  N+F S    +  KR   +  +K  +GK  ++   +L Q+
Sbjct: 267 NESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYANDRKRKVGK--ASDASQLPQY 324

Query: 48  -TNTPPHYDHQ 19
            T T P+ DHQ
Sbjct: 325 LTATIPYNDHQ 335


>Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical
           protein C47E12.10 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -1

Query: 210 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 64
           E + ++ +TEDE+   + N R+R+   KRA + K KKI   KV +  ++
Sbjct: 46  EKSESEDETEDED---SENQRRRK---KRAADKKRKKIKAAKVAAQKKE 88


>U60059-1|AAC47518.1|  376|Caenorhabditis elegans UNC-76 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 228 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQH 49
           N+ L +E    D    ++E  N+F S    +  KR   +  +K  +GK  ++   +L Q+
Sbjct: 274 NESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYANDRKRKVGK--ASDASQLPQY 331

Query: 48  -TNTPPHYDHQ 19
            T T P+ DHQ
Sbjct: 332 LTATIPYNDHQ 342


>U60058-1|AAC47517.1|  379|Caenorhabditis elegans UNC-76 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 228 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQH 49
           N+ L +E    D    ++E  N+F S    +  KR   +  +K  +GK  ++   +L Q+
Sbjct: 268 NESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYANDRKRKVGK--ASDASQLPQY 325

Query: 48  -TNTPPHYDHQ 19
            T T P+ DHQ
Sbjct: 326 LTATIPYNDHQ 336


>U28153-1|AAA68954.1|  385|Caenorhabditis elegans UNC-76 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 228 NDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQH 49
           N+ L +E    D    ++E  N+F S    +  KR   +  +K  +GK  ++   +L Q+
Sbjct: 274 NESLVDELAHRDELDYEKEMKNSFISLLLAIQNKRRVYANDRKRKVGK--ASDASQLPQY 331

Query: 48  -TNTPPHYDHQ 19
            T T P+ DHQ
Sbjct: 332 LTATIPYNDHQ 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,145
Number of Sequences: 27780
Number of extensions: 260988
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)