Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a07
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   0.84 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   0.84 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.84 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.84 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   4.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   5.9  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 KALRAILPDDLQKCEGVTPLRLRPPKILVT 231
           ++L +I+ +   K  G T +R+RPPK+  T
Sbjct: 63  ESLASIIDEAATKVHGTT-VRVRPPKVYPT 91


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 KALRAILPDDLQKCEGVTPLRLRPPKILVT 231
           ++L +I+ +   K  G T +R+RPPK+  T
Sbjct: 377 ESLASIIDEAATKVHGTT-VRVRPPKVYPT 405


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 KALRAILPDDLQKCEGVTPLRLRPPKILVT 231
           ++L +I+ +   K  G T +R+RPPK+  T
Sbjct: 610 ESLASIIDEAATKVHGTT-VRVRPPKVYPT 638


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 KALRAILPDDLQKCEGVTPLRLRPPKILVT 231
           ++L +I+ +   K  G T +R+RPPK+  T
Sbjct: 610 ESLASIIDEAATKVHGTT-VRVRPPKVYPT 638


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 479 FFRLSTQGKMRSVTVKDVEQD 417
           +FRL+T+G  R V   D   D
Sbjct: 42  YFRLTTEGDCRDVVRCDKNSD 62


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 173 CRNVKV*LHYVCAHRRSW*QS*LQQVSECKYDEGWQHNAHRTNQ 304
           C N++      C+    W    L +  +C Y EGW   +   +Q
Sbjct: 200 CDNLQYSFDNQCSGTIDWA---LPKQEDCFYQEGWNGQSFDVSQ 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,021
Number of Sequences: 336
Number of extensions: 2320
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)