Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a04
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.0  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   3.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.0  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 117 SKPVQSQAQQDHAVAKLDSRTAHRCRAVEHD-RNVRLH 7
           SKP    A Q  AVA+ ++R  +R + V +   N+R H
Sbjct: 41  SKPGGKTAPQPVAVARRNARERNRVKQVNNGFANLRQH 78


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 119 PRNQYKAKHNKITLLQNLTREQLIDAVQSSMTGTSDCT 6
           P +QY  K++ + L + L  ++L +   + +     CT
Sbjct: 19  PEDQYTIKYDNVNLKEILQSDRLTENYVNCLLEKKPCT 56


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 556 VHSTCGITSSSSHACN 603
           +H+TCG  ++  HA N
Sbjct: 356 LHATCGTKNALLHAVN 371


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 132 NFVKHVHGVGHIVAAKYHV 188
           N   H H  GH + A++HV
Sbjct: 318 NNQNHHHHAGHHIHAQHHV 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,298
Number of Sequences: 336
Number of extensions: 4051
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)