Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a03
         (334 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1; Schi...    37   0.10 
UniRef50_Q2GEP0 Cluster: Putative transporter; n=1; Neorickettsi...    33   1.3  
UniRef50_A1ZG69 Cluster: Putative regulatory protein; n=1; Micro...    31   3.9  
UniRef50_Q4Y3H0 Cluster: CIR protein, putative; n=4; Plasmodium ...    31   5.1  

>UniRef50_O42651 Cluster: Autophagy-related protein 17; n=1;
           Schizosaccharomyces pombe|Rep: Autophagy-related protein
           17 - Schizosaccharomyces pombe (Fission yeast)
          Length = 481

 Score = 36.7 bits (81), Expect = 0.10
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +3

Query: 3   LYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSALHN 182
           LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + L N
Sbjct: 49  LYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTDLRN 108

Query: 183 QLQNHMILHLIA 218
            ++ H  L  +A
Sbjct: 109 SIKQHQQLKELA 120


>UniRef50_Q2GEP0 Cluster: Putative transporter; n=1; Neorickettsia
           sennetsu str. Miyayama|Rep: Putative transporter -
           Neorickettsia sennetsu (strain Miyayama)
          Length = 533

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 59  FYLHEILIGSYTAIFN*LKTIMSTIRFRTPI*Q-VTNVSIT*SASKSHDFTFNSIMCTEV 235
           F+L  I +G +  I+    T++  IR   P+ + V       ++SKS    F+S+   E+
Sbjct: 184 FFLPAIFVGIFGIIYVIFLTLILPIR--KPVEEHVRRFLFVLNSSKSGRLIFSSVGIHEI 241

Query: 236 KNTLHNYV 259
           KN LHN+V
Sbjct: 242 KNILHNHV 249


>UniRef50_A1ZG69 Cluster: Putative regulatory protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative regulatory
           protein - Microscilla marina ATCC 23134
          Length = 247

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 135 GSAHQFNKSQMSALHNQLQNHMILHLIA*CVQKSKIHYIIMSN 263
           G A  F + +M   H QL    ILHL    VQK + H+II+S+
Sbjct: 15  GKAAFFRQQKMLEYHEQLSEKSILHL----VQKEQPHHIIISS 53


>UniRef50_Q4Y3H0 Cluster: CIR protein, putative; n=4; Plasmodium
           chabaudi|Rep: CIR protein, putative - Plasmodium
           chabaudi
          Length = 354

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 166 ICDLLNWCAEPNS*HYCF*SIENRCVAANQY 74
           ICD +N C+E +S + C  S E RCV+  QY
Sbjct: 141 ICDTINKCSESSSTNECIKSAE-RCVSLYQY 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,716,663
Number of Sequences: 1657284
Number of extensions: 5211894
Number of successful extensions: 9522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9520
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)