Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a03
         (334 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   1.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    20   7.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    20   7.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 240 IHYIIMSNSLPL--CKKKWKFSIPTKLKFKID 329
           + +I +++S P+  C KK     P+ L+ K+D
Sbjct: 230 VGHIEVNHSAPITTCNKKQHLESPSALQAKVD 261


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = +3

Query: 240 IHYIIMSNSLPLCKKKWKFSIPTKLKF 320
           + Y++++   P  +K  K S+P   ++
Sbjct: 33  VEYVLLNEDNPCARKCVKDSVPMTCRY 59


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 114 KQ*CQLLGSAHQFNKSQMSALHNQL 188
           KQ C+L    ++   SQ+  +HN++
Sbjct: 203 KQVCKLNNGHYKNFLSQVEIIHNEI 227


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 114 KQ*CQLLGSAHQFNKSQMSALHNQL 188
           KQ C+L    ++   SQ+  +HN++
Sbjct: 28  KQVCKLNNGHYKNFLSQVEIIHNEI 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,384
Number of Sequences: 336
Number of extensions: 1555
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)