Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a03
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    37   0.001
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   0.75 
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   3.0  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   4.0  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    25   4.0  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   4.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   5.3  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +3

Query: 3   LYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSALHN 182
           LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + L N
Sbjct: 49  LYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTDLRN 108

Query: 183 QLQNHMILHLIA 218
            ++ H  L  +A
Sbjct: 109 SIKQHQQLKELA 120


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 0.75
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 115 NNNVNY*VPHTNLTSHKCQHYIISFKIT*FYI**HNVYRSQKYTT*LCQTHS 270
           NN+ NY V       H+C+ ++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 298 ENFHFFLHSGSEFDIIM*CIFDFCTHYAIK 209
           ENFH     G   +    C+++   H+A+K
Sbjct: 68  ENFHILFMQGGGTEQFAACLYNVYAHHALK 97


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 136 VPHTNLTSHKCQHYIISF 189
           +PHT  ++H   H+IISF
Sbjct: 2   LPHTAFSNHIHYHFIISF 19


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 QLLGSAHQFNKSQMSALHNQLQNHMI 203
           QLLGSA  F  SQ++A+H  ++   +
Sbjct: 304 QLLGSAKGFVVSQVAAMHLSIRKRAL 329


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 334 VLSILNLSFVGIENFHFFLHSGSEFDIIM-*CIFDFCTHY 218
           + ++L + F+G   FH  L + +  +I++  C  +FC  +
Sbjct: 123 IQAVLEMVFIGKLGFHAILDTNASREIVLQQCAQEFCNSW 162


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 258  SNSLPLCKKKWKFSIPTKLK 317
            SN L   KKKWK+    KL+
Sbjct: 1250 SNWLKYAKKKWKYQKQVKLR 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,915
Number of Sequences: 5004
Number of extensions: 24747
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)