Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16a02
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.9  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    22   6.5  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   6.5  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   6.5  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   8.5  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   8.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   8.5  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 506 SFTRKLKKEF--RPCSNIKTLSKCYKNGA*LVSKTATT 399
           +FT +  K F  R  +NI ++S+C  NG  +++K   T
Sbjct: 19  AFTCEGCKSFFGRTYNNISSISECKNNGECVINKKNRT 56


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 363 LFLPDSPYLCHNCCRCFRH*SRS 431
           ++  D  Y+CH CC      S++
Sbjct: 641 MYAADVFYICHVCCSTIHEVSKA 663


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 759 ELKKEPVINFKFECSVCFETYSQQSNDTCPFLIPTTCDH 643
           ELKK      + +CS C E   + S+    +LI    D+
Sbjct: 64  ELKKNMPDAIETDCSKCSEKQKEGSDFIMRYLIDNKPDY 102


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 541 PHFYLGIAQWT 573
           PHF L +A WT
Sbjct: 132 PHFLLPVAAWT 142


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 541 PHFYLGIAQWT 573
           PHF L +A WT
Sbjct: 132 PHFLLPVAAWT 142


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -3

Query: 762 AELKKEPVINFKFECSVCFETYSQQSNDTCPFLI 661
           AELK+        ECS C ET    S      LI
Sbjct: 61  AELKRHLPDALHTECSKCSETQKNGSKKIMRHLI 94


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 346 FSFQSNYFCLILHIYVTIVVAVFDT 420
           FSF S + CL  + Y   +  ++ T
Sbjct: 73  FSFMSRFLCLPFYSYFFYLSYIYTT 97


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 346 FSFQSNYFCLILHIYVTIVVAVFDT 420
           FSF S + CL  + Y   +  ++ T
Sbjct: 29  FSFMSRFLCLPFYSYFFYLSYIYTT 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,532
Number of Sequences: 336
Number of extensions: 3621
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)