Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p24
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    32   0.084
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.26 
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       29   0.59 
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   2.4  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.2  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   3.2  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.5  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   7.3  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = -1

Query: 487 HAAPDSAPDGDVCDCLNTVGC-DCLNTVGCDCLKTVGCDC 371
           H     +  G  CDC +  GC DC  + GC       C C
Sbjct: 3   HTTQCKSKQGKPCDCQSKCGCQDCKESCGCKSSAVDNCKC 42


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +3

Query: 378 QPTVFKQSQPTVFKQSQPTVFKQSQ 452
           QPT F Q QPT F   QP  F Q Q
Sbjct: 126 QPTGFVQPQPTGFMSQQPASFMQPQ 150



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 357 PAVFKQSQPTVFKQSQPTVFKQSQPT 434
           P  F Q QPT F   QP  F Q Q T
Sbjct: 127 PTGFVQPQPTGFMSQQPASFMQPQRT 152


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +3

Query: 372 QSQPTVFKQSQPTVFKQSQPTVFKQSQ 452
           Q QPT F Q QPT F + Q T F Q Q
Sbjct: 310 QPQPTGFLQQQPTGFIRPQNTGFVQPQ 336


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 565 YHVHGQVNISNDDPLLSQEDDTIESVD 645
           +H  G    S  DP+L +  DT++S++
Sbjct: 351 FHTSGSSKFSEQDPILIEAKDTLDSLE 377


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 169 INSINTVIVLLVSTVQ-ASQPNEQYRYQPAMSRQINA-VTP 285
           +NS+N  I+ +   +Q +S  N+QY++      +++A +TP
Sbjct: 659 LNSLNNSILQMHQNLQNSSNTNDQYKFDSVQENELHANITP 699


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 430 GCDCLNTVGCDCLKTVGCDCL 368
           GC+C +  GCD      C+CL
Sbjct: 259 GCNCSSLGGCDLNNPSRCECL 279



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 451 CDCLNTVGCDCLNTVGCDCL 392
           C+C +  GCD  N   C+CL
Sbjct: 260 CNCSSLGGCDLNNPSRCECL 279


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 523 NEPLTRTYHSQGVTYHVHGQVNISNDDPLL--SQEDDTIESVDRASQQ 660
           N+P  R  H      +    VN S DD LL  S  D T +  D ++QQ
Sbjct: 166 NQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQ 213


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 91  FFALQKSSFLPDKFPYHYCLISRTLLINS 177
           F+ +   S +  K+P  YC+I   LLIN+
Sbjct: 21  FYPIFMLSMIARKYPCPYCMIILGLLINT 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,799
Number of Sequences: 5004
Number of extensions: 32945
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)