Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p24
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    32   0.47 
04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378     29   4.3  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   7.6  

>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 372 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAESG 479
           Q+QP+   QS P     SQPT F  S+   +G ++G
Sbjct: 850 QTQPSAASQSLPPGHPSSQPTPFNSSEIDSTGQQTG 885


>04_04_1211 + 31783076-31783680,31784162-31784427,31784546-31785378
          Length = 567

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 454 VCDCLNTVGCDCLNTVGCDCLKTVGCDCLKTAGL 353
           +CD L+ +G D   T+    +   GCD +  AG+
Sbjct: 528 ICDLLDDIGADGDKTIVVSIVPRCGCDSVTVAGV 561


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 336  LYNISRSPAVFKQSQPTVFKQSQPTVFKQSQPT 434
            +  +   P V K++ P V  ++QPT   ++QPT
Sbjct: 1426 IVKVEAQPVVKKETWPVVKMETQPTANVEAQPT 1458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,535
Number of Sequences: 37544
Number of extensions: 206919
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)