Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15p24
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical p... 29 2.9
Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical p... 29 2.9
Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical p... 29 2.9
Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical pr... 28 5.1
X53245-1|CAA37335.1| 63|Caenorhabditis elegans metallothionein... 28 5.1
M92910-1|AAA28111.1| 63|Caenorhabditis elegans metallothionein... 28 5.1
M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein ( C.ele... 28 5.1
M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein ( C.ele... 28 5.1
D17365-1|BAA04181.1| 63|Caenorhabditis elegans metallothionein... 28 5.1
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 27 8.9
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 27 8.9
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 27 8.9
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 27 8.9
>Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical
protein Y41E3.7c protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 473
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 87 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 120
>Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical
protein Y41E3.7b protein.
Length = 396
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 473
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 145 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 178
>Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical
protein Y41E3.7a protein.
Length = 435
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 QSQPTVFKQSQPTVFKQSQPTVFKQSQTSPSGAE 473
+ Q T+ +Q Q ++Q V+ Q T+P+GAE
Sbjct: 184 EQQTTLIRQLQEQHYQQYMSQVYAQQSTTPNGAE 217
>Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical
protein T08G5.10 protein.
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>X53245-1|CAA37335.1| 63|Caenorhabditis elegans metallothionein-II
protein.
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>M92910-1|AAA28111.1| 63|Caenorhabditis elegans metallothionein-2
protein.
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-2, complete cds.).
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-1, complete cds.).
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>D17365-1|BAA04181.1| 63|Caenorhabditis elegans metallothionein-II
protein.
Length = 63
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = -1
Query: 451 CDCLNTVGCDC-LNTVGCDCLKTVGCD--CLKTAGLREML*S*CDDG 320
CDC N C C T CDC C+ C TA ++ S C G
Sbjct: 5 CDCKNQ-NCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGG 50
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 451 CDCLNTVGCDCLNTVGCDCLKTVGCDC 371
CDCLN CD ++ C C+ G C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 451 CDCLNTVGCDCLNTVGCDCLKTVGCDC 371
CDCLN CD ++ C C+ G C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 451 CDCLNTVGCDCLNTVGCDCLKTVGCDC 371
CDCLN CD ++ C C+ G C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 451 CDCLNTVGCDCLNTVGCDCLKTVGCDC 371
CDCLN CD ++ C C+ G C
Sbjct: 292 CDCLNNQNCDS-SSGECKCIGWTGKHC 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,446
Number of Sequences: 27780
Number of extensions: 195853
Number of successful extensions: 594
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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