Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p23
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   0.64 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    24   4.5  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    24   4.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    24   5.9  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    24   5.9  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    24   5.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    23   7.9  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    23   7.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    23   7.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.9  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 83   SEMVWRDLKKVRIHIGCSLLQHQLSSSDCTSLYLP 187
            +++  R L +V+I +  S +  QLS  D T ++LP
Sbjct: 942  AKITQRKLSEVQIALADSKMNQQLSGKDSTDVHLP 976


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 135 EQPICIRTFFKSLQTISEAK*HCLMNLNSLSILHLQYLH 19
           E P  + T  KS     EAK   L N+   +I  LQY+H
Sbjct: 712 ENPKLVSTSQKSDDLDGEAKPPQLENIQGTTIQLLQYVH 750


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 LCLFLCVAFVCAVLVETCLVLM 232
           +C  +CV  +C ++   C VL+
Sbjct: 256 ICFGICVVIICVIVAVLCGVLI 277


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 98  RDLKKVRIHIGCSLLQHQLSSSDC 169
           R ++++ + +GCS+L H  +  DC
Sbjct: 550 RIIQQIALLLGCSILPHLKNLVDC 573


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 40  NRQAIEIHKTMSFGFRNGLERFEKGTNTYRLLPSPASAV-KFRL 168
           N  AI++   ++ G  NG+E+   GTN Y   P+ +  + K++L
Sbjct: 63  NFHAIQVIAAIAAG--NGVEKIIVGTNGYLSTPAASHIIRKYKL 104


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 58  IHKTMSFGFRNGLERFEKGTNTYRLLPSPASAVKF 162
           +H T     RNG+  F  G     L   P S++KF
Sbjct: 173 LHTTKVLWNRNGIRSFFVGNGINVLKVMPESSIKF 207


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 69  CLMNLNSLSILHLQYLHRY 13
           C++N+NS  I  L YL+ Y
Sbjct: 341 CVLNINSQVIAFLLYLYGY 359


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 144 WRREQPICIRTFFKSLQT 91
           WR E   C+R + KSL+T
Sbjct: 42  WRLEPAKCLRFYQKSLET 59


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 88  NGLERFEKGTNTYRLLPSPASA 153
           +G ERFE+G + ++ + + A A
Sbjct: 94  DGFERFERGVSAWKAITATAMA 115


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 209  DGITSFTRASITKCNL 162
            D + S TRA+I++C L
Sbjct: 2292 DSVASLTRATISRCGL 2307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,660
Number of Sequences: 5004
Number of extensions: 27019
Number of successful extensions: 69
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)