Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p23
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0926 + 9178804-9180324,9180612-9181157                           29   0.98 
10_08_0373 - 17286104-17288839                                         28   1.7  
06_03_0632 - 22949942-22951351                                         27   2.3  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     27   2.3  
01_07_0209 + 42005302-42005940                                         27   3.0  
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     27   4.0  
09_02_0488 - 9844247-9844717                                           26   6.9  
02_01_0117 - 866336-866890,867484-869010                               25   9.2  

>12_01_0926 + 9178804-9180324,9180612-9181157
          Length = 688

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 147 ISCQVQIALRY-TCPGETGNAIRSLVI 224
           ++C +Q+  R  T PGETG+ +RS V+
Sbjct: 326 VACSLQLMCRLVTAPGETGDKLRSQVL 352


>10_08_0373 - 17286104-17288839
          Length = 911

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 38   RIDKLLRFIRQCHLASEMVWRDL-KKVRIHIGCSLLQHQLSSSDCTSLY 181
            RI K  R   +CH + + + RD+ +++ +  GC+    Q  +  C  ++
Sbjct: 863  RISKNFRMCMECHSSIKFISRDMNREIFVSDGCTYHHFQNGACSCGDMW 911


>06_03_0632 - 22949942-22951351
          Length = 469

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 212 PDGITSFTRASITKCNLNLTADAGEGSNRYVFVPFSN-LSRPFLKPND 72
           PD + +F+ A+     +    + G+G  R   +PFS+     F+K  D
Sbjct: 35  PDALVTFSTAAAAHRRMFAEGEGGDGDGRLELLPFSDGTENGFVKRGD 82


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 193 KLVMPSGHW*SFGHKNQTCFNKNRTHERHAQKEAKAQRG 309
           +LV+PS H      K    F   RT E H  +   AQ G
Sbjct: 450 ELVIPSPHGHRSSKKKSMSFVSQRTQENHKDRTLLAQHG 488


>01_07_0209 + 42005302-42005940
          Length = 212

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 TYRLLPSPASAVKFRLHFVILALVKLVMPS 210
           T RL  SP +AVK    F +L+L   V+PS
Sbjct: 42  TLRLPTSPPAAVKLHGRFEVLSLSGTVLPS 71


>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 295 LPLFVRGVRVCGSC*NMFGSYDQRITNDLMAL-PVS 191
           LP     +R+ GSC  +   YD+ +T D+  L PV+
Sbjct: 95  LPAIYSRLRMIGSCNGLLCLYDEGVTGDIALLNPVT 130


>09_02_0488 - 9844247-9844717
          Length = 156

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -2

Query: 297 LCLFLCVAFVCAVLVETCLVLMTKGLPMT*WHYQF 193
           LC+ + +AF+C++L  + L+    G+PM  +  +F
Sbjct: 8   LCISIALAFICSLLATSGLIYC--GVPMVEFSIRF 40


>02_01_0117 - 866336-866890,867484-869010
          Length = 693

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 86  LKPNDIVL*ISIACLFSICNIY-IGITD 6
           L+P  +V    +A LF+ CN Y  G+TD
Sbjct: 415 LRPKHVVWAYVVAPLFAFCNAYGTGLTD 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,352
Number of Sequences: 37544
Number of extensions: 171966
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)