Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p23
         (310 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060396-1|AAL25435.1|  243|Drosophila melanogaster LD30158p pro...    27   4.7  
AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p pro...    27   4.7  
AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-P...    27   4.7  
AY121646-1|AAM51973.1|  255|Drosophila melanogaster LD17077p pro...    27   6.2  
AE014297-3731|AAF56409.1|  165|Drosophila melanogaster CG13652-P...    27   6.2  
AE014134-689|AAF51053.2| 1207|Drosophila melanogaster CG3399-PD,...    27   6.2  
AE014134-156|AAF51454.2|  255|Drosophila melanogaster CG3876-PA ...    27   6.2  
AE014298-959|AAF46203.1| 1123|Drosophila melanogaster CG4536-PA ...    26   8.2  

>AY060396-1|AAL25435.1|  243|Drosophila melanogaster LD30158p
           protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 212 PDGITSFTRASITKCNLNLTADAGEGS 132
           PDG+TS T A+++      T+ AG GS
Sbjct: 195 PDGVTSATAAAVSITATTTTSAAGAGS 221


>AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p
           protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 212 PDGITSFTRASITKCNLNLTADAGEGS 132
           PDG+TS T A+++      T+ AG GS
Sbjct: 872 PDGVTSATAAAVSITATTTTSAAGAGS 898


>AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-PB
           protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 212 PDGITSFTRASITKCNLNLTADAGEGS 132
           PDG+TS T A+++      T+ AG GS
Sbjct: 872 PDGVTSATAAAVSITATTTTSAAGAGS 898


>AY121646-1|AAM51973.1|  255|Drosophila melanogaster LD17077p
           protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 121 TYRLLPSPASAVKFRLHFVILALVKLVMPSG 213
           TY     P S V FRL F  LALV L +P G
Sbjct: 4   TYERFSDPKS-VLFRLPFARLALVALSLPLG 33


>AE014297-3731|AAF56409.1|  165|Drosophila melanogaster CG13652-PA
           protein.
          Length = 165

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 126 SVAPFSSISCQVQIALRYTCP 188
           S +PFS++ C V + L   CP
Sbjct: 34  SPSPFSNVQCPVSVVLEAQCP 54


>AE014134-689|AAF51053.2| 1207|Drosophila melanogaster CG3399-PD,
           isoform D protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 105 KSLQTISEAK*HCLMNLNSLSILHLQY 25
           + LQT  E++ HC ++L  L  L LQY
Sbjct: 119 RQLQTPVESEDHCSLSLGQLCQLQLQY 145


>AE014134-156|AAF51454.2|  255|Drosophila melanogaster CG3876-PA
           protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 121 TYRLLPSPASAVKFRLHFVILALVKLVMPSG 213
           TY     P S V FRL F  LALV L +P G
Sbjct: 4   TYERFSDPKS-VLFRLPFARLALVALSLPLG 33


>AE014298-959|AAF46203.1| 1123|Drosophila melanogaster CG4536-PA
            protein.
          Length = 1123

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 212  PDGITSFTRASITKCNLNLTADAGEGSNRYVF-VPFSNLSRPFLKPNDIV 66
            P  + S  +AS        TA A   S+     +P SNLS  F  P DIV
Sbjct: 875  PLPVASVAKASPAAPATQATATAAAASDLMAMPLPISNLSNLFQDPKDIV 924


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,070,874
Number of Sequences: 53049
Number of extensions: 298998
Number of successful extensions: 893
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)