Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15p23
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   2.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   2.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   2.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   3.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 247 CFNKNRTHERH 279
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 165 IALRYTCPGETGNAIR 212
           + L   C G TGN +R
Sbjct: 8   VCLGIVCQGTTGNILR 23



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 206 GITSFTRASITKCNLNLTADAGEGSN 129
           GI S ++ +I KC+     D+G  +N
Sbjct: 120 GIVSASKLAIDKCDRLWVLDSGLVNN 145


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 209 DGITSFTRASITKCNLNLTADAG 141
           DG+TS  R  + KC      D G
Sbjct: 118 DGLTSVYRMQVDKCGRLWILDTG 140


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 247 CFNKNRTHERH 279
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 165 IALRYTCPGETGNAIR 212
           + L   C G TGN +R
Sbjct: 8   VCLGIVCQGTTGNILR 23



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 206 GITSFTRASITKCNLNLTADAGEGSN 129
           GI S ++ +I KC+     D+G  +N
Sbjct: 120 GIVSASKLAIDKCDRLWVLDSGLVNN 145


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 247 CFNKNRTHERH 279
           C+N++RT ERH
Sbjct: 329 CWNEHRTLERH 339



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 165 IALRYTCPGETGNAIR 212
           + L   C G TGN +R
Sbjct: 8   VCLGIVCQGTTGNILR 23



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 206 GITSFTRASITKCNLNLTADAGEGSN 129
           GI S ++ +I KC+     D+G  +N
Sbjct: 120 GIVSASKLAIDKCDRLWVLDSGLVNN 145


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 209 DGITSFTRASITKCNLNLTADAGE 138
           DG+TS  R  + +C+     D+G+
Sbjct: 243 DGLTSVFRIQVDECDRLWILDSGK 266


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 2  NDQLYLCKYCKWR 40
          +D LY+C++C  R
Sbjct: 32 SDTLYVCEFCNRR 44


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +2

Query: 140 LQHQLSSSDCTSLYLPW*NW*CHQVIGNPLV 232
           L H  +    T+ Y+ W      +++  PLV
Sbjct: 662 LNHSPNYDQVTNWYMGWKGMLSEKILAEPLV 692


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 241 GSYDQRITNDLM 206
           GS+++R+ NDL+
Sbjct: 21  GSHEKRLLNDLL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,770
Number of Sequences: 438
Number of extensions: 1761
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)